Co-expression analysis

Gene ID	Zm.6080.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g20100: unknown protein (HF=8e+0)
Module size	28 genes
NF	0.22
%ile	16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	0.94	Zm.6080.2.S1_at	AI668342	-	-	8e+0	At5g20100	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.95	Zm.6235.1.A1_at	AW067088	hypothetical protein LOC100191165	-	2e-41	At1g79500	2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.5288.1.S1_at	CA828006	-	-	2e+0	At1g11980	RUB3 (UBIQUITIN-RELATED PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.788.1.A1_x_at	AY103572.1	Hypothetical protein LOC100194151	-	7e-72	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.5423.1.S1_at	CD997936	mitochondrial import receptor subunit TOM40	-	3e-3	At3g20000	TOM40	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.7648.1.A1_at	CO517814	hypothetical protein LOC100191181	-	5e-7	At5g40160	EMB506 (embryo defective 506)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.6149.1.A1_at	CA399198	omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2	-	9e-1	At5g43070	WPP1 (WPP domain protein 1)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.6582.1.A1_at	AI438877	ubiquitin carboxyl-terminal hydrolase isozyme L3	-	2e+0	At1g66260	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.5283.1.A1_at	AI619100	-	-	1e+1	At4g20670	lipase	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.96	Zm.13226.2.A1_at	CF012904	40S ribosomal protein S9	-	1e-41	At5g39850	40S ribosomal protein S9 (RPS9C)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.13016.1.A1_at	CA403346	hypothetical protein LOC100277160	-	2e+0	At1g22160	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.96	ZmAffx.1191.1.S1_at	BE025269	-	-	5e-2	At4g23720	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.7727.4.S1_s_at	CF972403	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	2e-102	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.9569.1.A1_at	AY103610.1	polyadenylate-binding protein 2	-	5e-7	At5g65260	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.6822.2.A1_at	CO518852	-	-	3e-2	At5g42560	abscisic acid-responsive HVA22 family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.6070.1.A1_at	BG873673	thioredoxin domain-containing protein 2	-	2e+0	At5g08120	MBP2C (MICROTUBULE BINDING PROTEIN 2C)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.6203.1.A1_x_at	CN844626	putative glutathione peroxidase	-	8e-50	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.4813.1.S1_at	CD977978	-	-	5e-1	At1g35537	-	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.97	Zm.4371.1.A1_at	BG517913	hypothetical protein LOC100217272	-	3e-1	At5g22240	OFP10	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.94	Zm.7746.1.A1_at	CF636114	reticulon	-	4e-2	At3g19460	reticulon family protein (RTNLB11)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.97	Zm.15694.1.A1_at	CD441036	-	-	6e-3	At4g22600	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.97	Zm.7636.1.A1_at	BM079275	prpl35-1 protein	-	8e-12	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.97	Zm.5988.1.A1_at	AI666062	legume lectins beta domain containing protein	-	8e-1	At5g48350	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.97	Zm.3954.1.A1_at	CF627734	shikimate kinase	-	7e-4	At2g21940	shikimate kinase, putative	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.94	Zm.6080.1.A1_at	AY106192.1	hypothetical protein LOC100276950	-	5e+0	At1g04778	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.96	Zm.4356.1.S1_at	AY107334.1	disulfide oxidoreductase/ electron carrier/ oxidoreductase	-	2e-1	At2g23430	ICK1	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.96	Zm.5990.1.S1_a_at	AY111300.1	-	-	2e-6	At5g49980	AFB5 (Auxin F-Box protein 5)	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.95	Zm.3159.1.A1_at	BG873749	gamma response I protein	-	2e-2	At3g52120	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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