Co-expression analysis

Gene ID	Zm.6076.1.A1_a_at
Gene name	COX VIIa-like protein
Homology with Arabidopsis	Similar to At2g21195: unknown protein (HF=3e-1)
Module size	6 genes
NF	0.47
%ile	58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.6076.1.A1_a_at	AY111015.1	COX VIIa-like protein	-	3e-1	At2g21195	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.6075.1.A1_at	BM074652	-	-	1e+0	At1g12320	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.2140.1.S1_at	AW453259	-	-	6e-1	At4g14455	ATBET12	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.99	Zm.5357.1.S1_at	AI619398	hypothetical protein LOC100273070	-	8e-4	At1g03110	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.17316.1.A1_at	CK369406	-	-	4e+0	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	Zm.6079.1.S1_at	BM268227	ribosomal protein L25	-	1e-53	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.6	92.9	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.6	92.9	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
2.5	92.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.0	90.2	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.9	89.6	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.9	89.6	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

A co-expression module including the grape gene, 1621381_at, orthologous to the query gene, Zm.6076.1.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1621381_at	At2g21195	-	-	7e+0	At5g17350	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1612831_s_at	At2g21195	H+-pyrophosphatase	-	5e-9	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.17	18.2	1606673_at	At2g21195	hypothetical protein LOC100253524	-	1e-13	At3g10620	ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1622174_at	At2g21195	hypothetical protein LOC100241032	-	5e+0	At4g38090	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	1609281_s_at	At2g21195	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.04	5.2	1620454_s_at	At2g21195	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Back to the CoP portal site

Back to the KAGIANA project homepage