Co-expression analysis

Gene ID	Zm.6076.1.A1_a_at
Gene name	COX VIIa-like protein
Homology with Arabidopsis	Similar to At2g21195: unknown protein (HF=3e-1)
Module size	6 genes
NF	0.47
%ile	58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.6076.1.A1_a_at	AY111015.1	COX VIIa-like protein	-	3e-1	At2g21195	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.6075.1.A1_at	BM074652	-	-	1e+0	At1g12320	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.2140.1.S1_at	AW453259	-	-	6e-1	At4g14455	ATBET12	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.99	Zm.5357.1.S1_at	AI619398	hypothetical protein LOC100273070	-	8e-4	At1g03110	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.17316.1.A1_at	CK369406	-	-	4e+0	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	Zm.6079.1.S1_at	BM268227	ribosomal protein L25	-	1e-53	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.6	92.9	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.6	92.9	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
2.5	92.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.0	90.2	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.9	89.6	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.9	89.6	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.4136.1.S1_at, orthologous to the query gene, Zm.6076.1.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	PtpAffx.4136.1.S1_at	At2g21195	hypothetical protein	-	8e-8	At4g21105	cytochrome-c oxidase/ electron carrier	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	Ptp.6243.1.S1_at	At2g21195	hypothetical protein	-	2e-91	At3g08590	2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.78971.1.S1_at	At2g21195	hypothetical protein	-	1e-7	At3g15150	zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.59364.1.S1_s_at	At2g21195	hypothetical protein	-	8e-15	At3g44330	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.2346.1.S1_at	At2g21195	hypothetical protein	-	1e-23	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.532.1.S1_at	At2g21195	hypothetical protein	-	1e-4	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	Ptp.929.1.S1_at	At2g21195	hypothetical protein	-	5e-1	At1g54140	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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