CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.6076.1.A1_a_at

Gene name COX VIIa-like protein
Homology with Arabidopsis Similar to At2g21195: unknown protein (HF=3e-1)

Module size 6 genes

NF 0.47

%ile 58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.99 Zm.6076.1.A1_a_at AY111015.1 COX VIIa-like protein - 3e-1 At2g21195 unknown protein O.I. H.G. S.X.
0.73 89.9 0.99 Zm.6075.1.A1_at BM074652 - - 1e+0 At1g12320 unknown protein O.I. H.G. S.X.
0.40 48.5 0.99 Zm.2140.1.S1_at AW453259 - - 6e-1 At4g14455 ATBET12 O.I. H.G. S.X.
0.35 38.9 0.99 Zm.5357.1.S1_at AI619398 hypothetical protein LOC100273070 - 8e-4 At1g03110 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.32 33.4 0.99 Zm.17316.1.A1_at CK369406 - - 4e+0 At5g38317 LCR58 (Low-molecular-weight cysteine-rich 58) O.I. H.G. S.X.
0.29 28.1 0.99 Zm.6079.1.S1_at BM268227 ribosomal protein L25 - 1e-53 At2g39460 RPL23AA (RIBOSOMAL PROTEIN L23AA) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 94.5 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9 93.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8 93.5 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.6 92.9 GSM253279 ZM_8d_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
2.6 92.9 GSM375788 Deep-sowing 10d treatment Control, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
2.5 92.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3 91.7 GSM202297 Mo17 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.0 90.2 GSM202290 Mo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.9 89.6 GSM202303 Mo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.9 89.6 GSM385709 Deep-sowing 10d treatment TIBA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g21195, orthologous to the query gene, Zm.6076.1.A1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g21195 816656 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. H.G. S.X.
1.00 100.0 At3g62330 825406 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. H.G. S.X.
1.00 100.0 At4g01570 828133 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBA O.I. H.G. S.X.
1.00 100.0 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV O.I. H.G. S.X.
0.97 97.6 At1g07970 837312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB O.I. H.G. S.X.
0.97 97.6 At1g15080 838072 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. O.I. H.G. S.X.
0.97 97.6 At2g38880 818472 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance. O.I. H.G. S.X.
0.97 97.6 At3g06790 819864 plastid developmental protein DAG, putative F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.97 97.6 At4g24700 828572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.97 97.6 At2g36990 818273 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. O.I. H.G. S.X.
0.93 96.4 At4g19400 827681 actin binding F:actin binding;P:cytoskeleton organization;C:actin cytoskeleton;PO O.I. H.G. S.X.
0.93 96.4 At2g20740 816603 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PO O.I. H.G. S.X.
0.93 96.4 At5g32450 833204 RNA recognition motif (RRM)-containing protein F:oxidoreductase activity, nucleotide binding, nucleic acid binding;P:oxidation reduction;C:unknown;PFMO O.I. H.G. S.X.
0.87 93.5 At5g24400 832511 emb2024 (embryo defective 2024) F:6-phosphogluconolactonase activity, catalytic activity;P:embryonic development ending in seed dormancy, carbohydrate metabolic process;C:peroxisome, chloroplast stroma, chloroplast;BOMFP O.I. H.G. S.X.
0.77 88.0 At3g13940 820607 DNA binding / DNA-directed RNA polymerase F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:nucleus;FMPOB O.I. H.G. S.X.
0.73 85.5 At4g38890 830044 dihydrouridine synthase family protein F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:oxidation reduction, tRNA processing, metabolic process;C:vacuole;BOMFPA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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