CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.6075.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g12320: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.59

%ile 78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.2 0.99 Zm.6075.1.A1_at BM074652 - - 1e+0 At1g12320 unknown protein O.I. H.G. S.X.
0.67 85.8 0.99 Zm.6076.1.A1_a_at AY111015.1 COX VIIa-like protein - 3e-1 At2g21195 unknown protein O.I. H.G. S.X.
0.63 81.1 0.99 Zm.405.1.A1_at AF037034.2 hypothetical LOC541674 - 2e-1 At5g05340 peroxidase, putative O.I. H.G. S.X.
0.50 65.7 0.99 Zm.13859.1.S1_at AF439724.1 methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1 - 1e-12 At3g12290 tetrahydrofolate dehydrogenase/cyclohydrolase, putative O.I. H.G. S.X.
0.42 51.3 0.99 Zm.5357.1.S1_at AI619398 hypothetical protein LOC100273070 - 8e-4 At1g03110 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.40 48.5 0.99 Zm.17316.1.A1_at CK369406 - - 4e+0 At5g38317 LCR58 (Low-molecular-weight cysteine-rich 58) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.9 98.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0 98.0 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5 97.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4 97.0 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8 96.6 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9 93.8 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the grape gene, 1613973_at, orthologous to the query gene, Zm.6075.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.79 92.7 1613973_at At1g12320 - - 9e+0 At2g03180 unknown protein O.I. H.G. S.X.
0.88 95.4 1621605_x_at At1g12320 - - 1e+1 At4g36960 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.80 93.6 1606850_x_at At1g12320 - - 3e+0 At2g25810 TIP4 O.I. H.G. S.X.
0.79 92.7 1607596_x_at At1g12320 - - 6e+0 At4g01900 GLB1 (GLNB1 HOMOLOG) O.I. H.G. S.X.
0.79 92.7 1615330_at At1g12320 hypothetical protein LOC100247382 - 6e+0 At5g20520 WAV2 (WAVY GROWTH 2) O.I. H.G. S.X.
0.73 90.8 1609928_x_at At1g12320 - - 3e-1 At3g08000 RNA-binding protein, putative O.I. H.G. S.X.
0.71 89.5 1611304_at At1g12320 hypothetical LOC100257033 - 7e-1 At3g46000 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) O.I. H.G. S.X.
0.69 88.3 1607919_x_at At1g12320 - - 4e+0 At1g18080 ATARCA O.I. H.G. S.X.
0.67 87.9 1614927_x_at At1g12320 - - 3e-1 At3g08000 RNA-binding protein, putative O.I. H.G. S.X.
0.67 87.9 1621193_at At1g12320 - - 9e+0 At2g02120 PDF2.1 O.I. H.G. S.X.
0.60 81.9 1608065_s_at At1g12320 hypothetical protein LOC100262258 - 1e+0 At2g15270 unknown protein O.I. H.G. S.X.
0.60 81.9 1612889_s_at At1g12320 - - 7e-1 At1g73490 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.59 80.6 1616890_x_at At1g12320 - - 1e+1 At5g40700 unknown protein O.I. H.G. S.X.
0.55 77.3 1609660_at At1g12320 hypothetical protein LOC100263702 - 4e-1 At4g00895 ATP synthase delta chain-related O.I. H.G. S.X.
0.54 75.7 1622208_x_at At1g12320 - - 7e-1 At2g26150 ATHSFA2 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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