Co-expression analysis

Gene ID	Zm.6075.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g12320: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.59
%ile	78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.99	Zm.6075.1.A1_at	BM074652	-	-	1e+0	At1g12320	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.6076.1.A1_a_at	AY111015.1	COX VIIa-like protein	-	3e-1	At2g21195	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.99	Zm.405.1.A1_at	AF037034.2	hypothetical LOC541674	-	2e-1	At5g05340	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.13859.1.S1_at	AF439724.1	methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1	-	1e-12	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.99	Zm.5357.1.S1_at	AI619398	hypothetical protein LOC100273070	-	8e-4	At1g03110	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.17316.1.A1_at	CK369406	-	-	4e+0	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the barley gene, Contig15189_at, orthologous to the query gene, Zm.6075.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.39	50.5	Contig15189_at	At1g12320	-	-	1e+0	At3g09032	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	HS01M21w_s_at	At1g12320	-	-	1e+1	At5g54970	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig20757_at	At1g12320	-	-	5e+0	At5g03204	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig8642_at	At1g12320	-	-	3e-3	At3g04730	IAA16	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig6075_at	At1g12320	-	-	3e+0	At4g28940	catalytic	O.I.	H.G.	S.X.	Please select
0.03	2.6	Contig15142_at	At1g12320	-	-	2e-7	At5g17760	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	Contig9588_at	At1g12320	-	-	5e-20	At4g11740	SAY1	O.I.	H.G.	S.X.	Please select
0.01	1.1	S0000700049F02F1_at	At1g12320	-	-	7e-1	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.01	1.1	Contig10964_at	At1g12320	-	-	9e-6	At1g21790	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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