Co-expression analysis

Gene ID	Zm.6075.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g12320: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.59
%ile	78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.99	Zm.6075.1.A1_at	BM074652	-	-	1e+0	At1g12320	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.6076.1.A1_a_at	AY111015.1	COX VIIa-like protein	-	3e-1	At2g21195	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.99	Zm.405.1.A1_at	AF037034.2	hypothetical LOC541674	-	2e-1	At5g05340	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.13859.1.S1_at	AF439724.1	methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1	-	1e-12	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.99	Zm.5357.1.S1_at	AI619398	hypothetical protein LOC100273070	-	8e-4	At1g03110	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.17316.1.A1_at	CK369406	-	-	4e+0	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.psMY011iF01r_at, orthologous to the query gene, Zm.6075.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.9	PsAffx.psMY011iF01r_at	At1g12320	-	-	4e+0	At5g59060	unknown protein	O.I.	H.G.	S.X.	Please select
0.78	90.6	PsAffx.C66000075_at	At1g12320	-	-	7e+0	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.74	89.2	PsAffx.C82000035_at	At1g12320	-	-	1e+1	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please select
0.74	89.2	PsAffx.C207000019_at	At1g12320	-	-	8e+0	At5g24540	BGLU31 (BETA GLUCOSIDASE 31)	O.I.	H.G.	S.X.	Please select
0.69	86.8	PsAffx.CL941Contig1_at	At1g12320	-	-	5e+0	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select
0.64	83.4	PsAffx.C30000032_at	At1g12320	-	-	4e+0	At4g37450	AGP18 (ARABINOGALACTAN PROTEIN 18)	O.I.	H.G.	S.X.	Please select
0.63	82.9	PsAffx.C18000086_at	At1g12320	-	-	4e-1	At1g69490	NAP (NAC-like, activated by AP3/PI)	O.I.	H.G.	S.X.	Please select
0.63	82.9	PsAffx.CL2584Contig1_at	At1g12320	-	-	1e-1	At3g09890	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	PsAffx.C217000003_at	At1g12320	-	-	8e-1	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.	Please select
0.59	79.5	PsAffx.CL908Contig1_s_at	At1g12320	-	-	1e+0	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	PsAffx.C141000043_at	At1g12320	-	-	2e-1	At1g74440	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	PsAffx.CL851Contig1_at	At1g12320	-	-	4e-1	At2g18030	peptide methionine sulfoxide reductase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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