CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.6075.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g12320: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.59

%ile 78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.2 0.99 Zm.6075.1.A1_at BM074652 - - 1e+0 At1g12320 unknown protein O.I. H.G. S.X.
0.67 85.8 0.99 Zm.6076.1.A1_a_at AY111015.1 COX VIIa-like protein - 3e-1 At2g21195 unknown protein O.I. H.G. S.X.
0.63 81.1 0.99 Zm.405.1.A1_at AF037034.2 hypothetical LOC541674 - 2e-1 At5g05340 peroxidase, putative O.I. H.G. S.X.
0.50 65.7 0.99 Zm.13859.1.S1_at AF439724.1 methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1 - 1e-12 At3g12290 tetrahydrofolate dehydrogenase/cyclohydrolase, putative O.I. H.G. S.X.
0.42 51.3 0.99 Zm.5357.1.S1_at AI619398 hypothetical protein LOC100273070 - 8e-4 At1g03110 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.40 48.5 0.99 Zm.17316.1.A1_at CK369406 - - 4e+0 At5g38317 LCR58 (Low-molecular-weight cysteine-rich 58) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.9 98.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0 98.0 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5 97.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4 97.0 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8 96.6 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9 93.8 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g12320, orthologous to the query gene, Zm.6075.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.33 38.1 At1g12320 837786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.71 84.2 At1g19630 838550 CYP722A1 member of CYP722A O.I. H.G. S.X.
0.46 59.8 At3g28360 822465 PGP16 (P-GLYCOPROTEIN 16) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV O.I. H.G. S.X.
0.44 57.2 At2g44745 819083 WRKY family transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PO O.I. H.G. S.X.
0.40 50.8 At5g64530 836574 XND1 F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;P O.I. H.G. S.X.
0.37 45.0 At5g16080 831465 AtCXE17 (Arabidopsis thaliana carboxyesterase 17) F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV O.I. H.G. S.X.
0.31 33.8 At4g25434 828648 ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10) F:ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity;P:metabolic process;C:unknown;BOMPAF O.I. H.G. S.X.
0.24 20.7 At5g11930 831066 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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