Co-expression analysis

Gene ID Zm.6054.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g25490: zinc finger (Ran-binding) family protein (HF=3e+0)
Module size 6 genes
NF 0.70
%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.6054.1.A1_atAW497492--3e+0At5g25490zinc finger (Ran-binding) family proteinO.I.H.G.S.X.
0.7389.90.98Zm.14400.1.S1_atAW000473hypothetical protein LOC100191706-8e-52At4g02720unknown proteinO.I.H.G.S.X.
0.6785.80.98Zm.14489.1.S1_atBQ527929MFS18 protein-1e+0At5g6751060S ribosomal protein L26 (RPL26B)O.I.H.G.S.X.
0.6077.80.98Zm.15800.5.A1_x_atCA404204--1e-5At4g13780methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putativeO.I.H.G.S.X.
0.5065.70.98Zm.5517.1.A1_atBE051194hypothetical protein LOC100273563-2e-1At1g15740leucine-rich repeat family proteinO.I.H.G.S.X.
0.4048.50.98Zm.4371.1.A1_atBG517913hypothetical protein LOC100217272-3e-1At5g22240OFP10O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7792.10.98Zm.4369.2.S1_atCF016250--5e+0At2g37590Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.6077.80.97Zm.6369.3.A1_atAI881634Putative zinc finger protein30-5e-5At3g15680zinc finger (Ran-binding) family proteinO.I.H.G.S.X.
0.5065.70.97Zm.6070.1.A1_atBG873673thioredoxin domain-containing protein 2-2e+0At5g08120MBP2C (MICROTUBULE BINDING PROTEIN 2C)O.I.H.G.S.X.
0.4759.90.97Zm.6162.2.S1_atAI676924--4e-5At1g62760invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.4759.90.98Zm.6590.1.A1_atAY108493.1Hypothetical protein LOC100191320-4e-114At5g20890chaperonin, putativeO.I.H.G.S.X.
0.4455.70.97Zm.4017.1.S1_atAY106327.1--9e-9At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.4251.30.96Zm.5927.2.A1_x_atBE012132hypothetical protein LOC100194338-1e-38At2g44350ATCSO.I.H.G.S.X.
0.4048.50.98Zm.19266.1.A1_atCO521373--2e+1At5g20570RBX1 (RING-BOX 1)O.I.H.G.S.X.
0.4048.50.98Zm.9023.1.A1_atAY109177.1--4e-14At4g02480AAA-type ATPase family proteinO.I.H.G.S.X.
0.3844.20.98Zm.5106.1.A1_atAI600864hypothetical protein LOC100273412-1e-20At4g22330ATCES1O.I.H.G.S.X.
0.3844.20.96Zm.14124.1.A1_atCK347727hypothetical protein LOC100192524-8e-1At1g37150HCS2 (holocarboxylase synthetase 2)O.I.H.G.S.X.
0.3844.20.97Zm.9163.1.A1_atBM267003--8e-2At4g33660unknown proteinO.I.H.G.S.X.
0.3641.30.97Zm.15532.1.S1_atCF021722hypothetical protein LOC100279598-2e-2At1g64950CYP89A5O.I.H.G.S.X.
0.3641.30.97Zm.3900.2.A1_atBM267197hypothetical protein LOC100191188-1e-17At3g59580RWP-RK domain-containing proteinO.I.H.G.S.X.
0.3641.30.98Zm.2592.1.S1_atBM351079hypothetical protein LOC100191248-1e-5At5g20720CPN20 (CHAPERONIN 20)O.I.H.G.S.X.
0.3538.90.96Zm.559.1.A1_atAF244699.1glutathione S-transferase GST 34-3e-2At5g62480ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)O.I.H.G.S.X.
0.3538.90.96Zm.6684.4.S1_atAI739945--2e-19At3g0670060S ribosomal protein L29 (RPL29A)O.I.H.G.S.X.
0.3336.00.96Zm.17774.1.A1_atCK370354nitric oxide synthase interacting protein-4e-8At1g61620phosphoinositide bindingO.I.H.G.S.X.
0.3336.00.98Zm.4898.1.S1_atBI417088hypothetical protein LOC100279412-6e-25At4g16143IMPA-2 (IMPORTIN ALPHA ISOFORM 2)O.I.H.G.S.X.
0.3233.40.97Zm.744.1.A1_atBM332523ATP-dependent Clp protease adaptor protein ClpS containing protein-5e+0At5g39700MYB89 (myb domain protein 89)O.I.H.G.S.X.
0.3233.40.98Zm.796.1.A1_a_atCK370719--3e-9At5g53140protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.3029.80.96Zm.5871.1.A1_atBM339000SAUR36 - auxin-responsive SAUR family member-2e+0At5g66260auxin-responsive protein, putativeO.I.H.G.S.X.
0.3029.80.97Zm.5977.1.A1_atBM349445hypothetical protein LOC100277569-1e-1At1g74530unknown proteinO.I.H.G.S.X.
0.3029.80.98Zm.12244.2.S1_x_atAI668243--9e-1At5g46940invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.2828.10.95Zm.901.1.S1_atAY109251.1--1e+0At2g36026-O.I.H.G.S.X.
0.2724.60.96Zm.1415.1.A1_atBG840912hypothetical protein LOC100191304-3e-9At5g67400peroxidase 73 (PER73) (P73) (PRXR11)O.I.H.G.S.X.
0.2724.60.97Zm.4441.1.A1_atAW066817--1e-1At4g05340ATP bindingO.I.H.G.S.X.
0.2724.60.97Zm.6780.3.A1_x_atAI833809hypothetical protein LOC100274579-4e-12At1g79550PGK (PHOSPHOGLYCERATE KINASE)O.I.H.G.S.X.
0.2724.60.97Zm.9091.1.S1_atBM266507--2e+0At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2724.60.97Zm.10097.1.A1_atBQ538355cupin, RmlC-type-2e+0At1g27130ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)O.I.H.G.S.X.
0.2521.30.95Zm.10837.1.S1_atBQ621347--9e+0At3g23600dienelactone hydrolase family proteinO.I.H.G.S.X.
0.2521.30.96Zm.5490.1.S1_atAY108961.1hypothetical protein LOC100216677-1e-5At5g63880VPS20.1O.I.H.G.S.X.
0.2521.30.97ZmAffx.762.1.S1_atAI746038--8e-1At1g78895-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.699.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.098.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.498.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.498.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.692.9GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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