CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.6054.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g25490: zinc finger (Ran-binding) family protein (HF=3e+0)

Module size 6 genes

NF 0.70

%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.98 Zm.6054.1.A1_at AW497492 - - 3e+0 At5g25490 zinc finger (Ran-binding) family protein O.I. H.G. S.X.
0.73 89.9 0.98 Zm.14400.1.S1_at AW000473 hypothetical protein LOC100191706 - 8e-52 At4g02720 unknown protein O.I. H.G. S.X.
0.67 85.8 0.98 Zm.14489.1.S1_at BQ527929 MFS18 protein - 1e+0 At5g67510 60S ribosomal protein L26 (RPL26B) O.I. H.G. S.X.
0.60 77.8 0.98 Zm.15800.5.A1_x_at CA404204 - - 1e-5 At4g13780 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative O.I. H.G. S.X.
0.50 65.7 0.98 Zm.5517.1.A1_at BE051194 hypothetical protein LOC100273563 - 2e-1 At1g15740 leucine-rich repeat family protein O.I. H.G. S.X.
0.40 48.5 0.98 Zm.4371.1.A1_at BG517913 hypothetical protein LOC100217272 - 3e-1 At5g22240 OFP10 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.6 99.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0 98.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4 98.9 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4 98.9 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7 98.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5 98.7 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2 98.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1 97.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6 92.9 GSM320464 protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os08g0366300, orthologous to the query gene, Zm.6054.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 Os08g0366300 At5g25490 - - 1e+0 At3g12835 unknown protein O.I. H.G. S.X.
0.73 91.1 Os11g0208300 At5g25490 - - 2e+0 At4g17310 unknown protein O.I. H.G. S.X.
0.67 87.2 Os05g0122400 At5g25490 - HECT domain containing protein 4e+0 At5g03850 40S ribosomal protein S28 (RPS28B) O.I. H.G. S.X.
0.60 79.7 Os09g0440000 At5g25490 - Hypothetical protein 2e-1 At1g02405 proline-rich family protein O.I. H.G. S.X.
0.60 79.7 Os11g0481600 At5g25490 - Hypothetical protein 9e-1 At4g18870 heat shock transcription factor family protein O.I. H.G. S.X.
0.53 71.3 Os03g0700600 At5g25490 - Conserved hypothetical protein 1e-1 At3g43520 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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