Co-expression analysis

Gene ID	Zm.6054.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g25490: zinc finger (Ran-binding) family protein (HF=3e+0)
Module size	6 genes
NF	0.70
%ile	91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.6054.1.A1_at	AW497492	-	-	3e+0	At5g25490	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.14400.1.S1_at	AW000473	hypothetical protein LOC100191706	-	8e-52	At4g02720	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.14489.1.S1_at	BQ527929	MFS18 protein	-	1e+0	At5g67510	60S ribosomal protein L26 (RPL26B)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.15800.5.A1_x_at	CA404204	-	-	1e-5	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.5517.1.A1_at	BE051194	hypothetical protein LOC100273563	-	2e-1	At1g15740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.4371.1.A1_at	BG517913	hypothetical protein LOC100217272	-	3e-1	At5g22240	OFP10	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.6	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.psHA001iF08r_s_at, orthologous to the query gene, Zm.6054.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	PsAffx.psHA001iF08r_s_at	At5g25490	-	-	2e+1	At5g07250	ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.50	71.7	PsAffx.C99000030_s_at	At5g25490	-	-	2e+0	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.C173000014_at	At5g25490	-	-	3e-1	At2g45800	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.80926.1.S1_s_at	At5g25490	-	-	1e+1	At3g02310	SEP2 (SEPALLATA 2)	O.I.	H.G.	S.X.	Please select
0.33	46.1	PsAffx.CL1305Contig1_at	At5g25490	-	-	7e+0	At3g63260	ATMRK1	O.I.	H.G.	S.X.	Please select
0.11	14.2	GmaAffx.30928.1.S1_s_at	At5g25490	-	-	2e-1	At3g06545	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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