Co-expression analysis

Gene ID	Zm.6039.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g03520: ATRAB8C (HF=9e-65)
Module size	23 genes
NF	0.56
%ile	73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.93	Zm.6039.1.A1_at	BG837895	-	-	9e-65	At5g03520	ATRAB8C	O.I.	H.G.	S.X.	Please select
0.78	92.5	0.97	Zm.5220.1.S1_at	AI614989	hypothetical protein LOC100279470	-	1e+0	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.96	Zm.18590.1.A1_at	AW562614	exostosin-like	-	1e+0	At5g22930	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.97	Zm.5441.1.S1_at	CO528962	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.97	Zm.16482.2.A1_at	BM337760	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.97	Zm.18903.1.A1_at	CO530915	-	-	7e-2	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.97	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.95	Zm.4561.2.A1_x_at	CO532693	-	-	6e+0	At5g65520	binding	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.96	Zm.3484.1.A1_at	AW438127	hypothetical protein LOC100273241	-	2e+0	At1g67700	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.96	Zm.5917.1.A1_a_at	BM337345	hypothetical protein LOC100192679	-	2e+0	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.95	Zm.19059.1.A1_at	CO521551	hypothetical protein LOC100193008	-	4e-1	At1g78170	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.96	Zm.10315.1.S1_at	AF461732.1	uncoupling protein	-	6e-5	At5g58970	ATUCP2 (UNCOUPLING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.4099.2.A1_s_at	AI770849	hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.97	Zm.1546.3.A1_x_at	CK369824	-	-	1e-6	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.17772.1.S1_at	CK371641	-	-	6e-2	At4g28170	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.6011.1.A1_at	AI738205	hypothetical protein LOC100280191	-	2e-10	At1g34420	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.2967.1.A1_at	AW119983	-	-	1e+0	At1g30110	ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	Zm.12132.3.S1_a_at	AI461523	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.6418.1.S1_at	AY108322.1	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.96	Zm.4462.1.A1_at	AI714968	-	-	1e+1	At4g00342	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.10082.1.A1_at	BM378776	hypothetical protein LOC100279529	-	3e-10	At5g18590	kelch repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.95	Zm.9792.1.A1_at	BM338998	pleckstrin homology domain-containing protein 1	-	7e-3	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.11907.1.S1_at	CK370738	hypothetical protein LOC100194010	-	2e-15	At3g24090	glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.3	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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