Co-expression analysis

Gene ID Zm.6026.1.S1_at
Gene name hypothetical protein LOC100194158
Homology with ArabidopsisSimilar to At3g07100: protein transport protein Sec24, putative (HF=7e-21)
Module size 6 genes
NF 0.18
%ile 12.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.99Zm.6026.1.S1_atCA405322hypothetical protein LOC100194158-7e-21At3g07100protein transport protein Sec24, putativeO.I.H.G.S.X.
0.6077.80.99Zm.1090.4.A1_atBQ547886--2e+0At4g17585unknown proteinO.I.H.G.S.X.
0.3641.30.99Zm.17525.1.S1_atAY639018.1sucrose transport protein 4-3e-13At1g09960SUT4 (SUCROSE TRANSPORTER 4)O.I.H.G.S.X.
0.115.30.99Zm.4131.1.A1_atAI855072--1e+0At4g20325unknown proteinO.I.H.G.S.X.
0.115.30.99Zm.13322.1.A1_atBM895136--1e+0At1g52855unknown proteinO.I.H.G.S.X.
0.072.90.99Zm.4402.1.A1_atAW091394hypothetical protein LOC100193028-1e-3At5g21160La domain-containing protein / proline-rich family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.99Zm.14765.1.A1_atCB334162--5e+0At4g10680transcription factor IIB (TFIIB) family proteinO.I.H.G.S.X.
0.6179.50.99Zm.9379.1.A1_s_atBM268447origin recognition complex subunit 3-6e+0At5g61650CYCP4O.I.H.G.S.X.
0.6077.80.98Zm.17922.1.A1_atCK827350--8e+0At5g35195-O.I.H.G.S.X.
0.5065.70.99Zm.10394.1.S1_atBQ163241hypothetical protein LOC100276017-5e-3At1g16810unknown proteinO.I.H.G.S.X.
0.5065.70.99ZmAffx.408.1.A1_atAI676837--3e+0At5g47650ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)O.I.H.G.S.X.
0.4455.70.99ZmAffx.282.2.S1_atAI670245--3e+0At5g09520hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4455.70.99Zm.8716.1.A1_atBM075322--6e+0At5g49525unknown proteinO.I.H.G.S.X.
0.4455.70.99Zm.10402.1.S1_atBQ163762hypothetical protein LOC100274678-1e-1At4g20000VQ motif-containing proteinO.I.H.G.S.X.
0.4455.70.99ZmAffx.228.1.A1_atAI670240--5e-2At5g59000zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4455.70.99ZmAffx.1063.1.S1_atAI881959--5e-5At1g45130BGAL5 (beta-galactosidase 5)O.I.H.G.S.X.
0.3844.20.98Zm.10590.1.S1_atBM378591hypothetical protein LOC100194249-6e-17At1g30510ATRFNR2 (ROOT FNR 2)O.I.H.G.S.X.
0.3538.90.99Zm.15899.3.A1_atAW172030early nodulin 93-9e-1At1g31760SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.3538.90.99Zm.14028.1.S1_atCD439553--1e-5At1g52740HTA9 (HISTONE H2A PROTEIN 9)O.I.H.G.S.X.
0.3538.90.99ZmAffx.1033.1.S1_atAI881710catalytic/ ligase-8e-1At1g12064unknown proteinO.I.H.G.S.X.
0.3336.00.99Zm.1317.1.A1_atCF634693signal recognition particle 19 kDa protein-6e+0At2g40060protein binding / structural moleculeO.I.H.G.S.X.
0.3336.00.99Zm.14916.1.A1_atAI978019ubiquitin-conjugating enzyme E2-21 kDa 1-2e-25At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)O.I.H.G.S.X.
0.3336.00.99Zm.15817.1.S1_x_atD87044.1protein kinase catalytic domain-1e-4At4g38230CPK26O.I.H.G.S.X.
0.3233.40.98Zm.976.1.S1_atAY107864.1hypothetical protein LOC100193876-8e+0At5g63530ATFP3O.I.H.G.S.X.
0.3131.60.98Zm.3919.1.S1_atBG840867hypothetical protein LOC100194180-7e-16At3g05280integral membrane Yip1 family proteinO.I.H.G.S.X.
0.3131.60.98Zm.10847.1.A1_atCF627982seryl-tRNA synthetase-1e-5At1g11870SRS (SERYL-TRNA SYNTHETASE)O.I.H.G.S.X.
0.3131.60.98Zm.15854.1.S1_atCK370725--4e-39At4g38620MYB4O.I.H.G.S.X.
0.2928.10.99Zm.2769.1.S1_atBM336917--5e-1At3g12030unknown proteinO.I.H.G.S.X.
0.2724.60.98Zm.18933.2.S1_atAI734652solute carrier family 23 member 2-2e-2At2g34190xanthine/uracil permease family proteinO.I.H.G.S.X.
0.2724.60.99Zm.4376.1.A1_atAI712238hypothetical protein LOC100275363-2e+0At2g23830vesicle-associated membrane protein, putative / VAMP, putativeO.I.H.G.S.X.
0.2521.30.98Zm.5476.3.A1_atAI676920hypothetical protein LOC100272988-3e-75At1g24510T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeO.I.H.G.S.X.
0.2521.30.99Zm.6171.1.S1_atCA404993hypothetical protein LOC100275746-1e+0At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2521.30.99ZmAffx.544.1.A1_atAI712096hypothetical protein LOC100277115-3e+0At1g04800glycine-rich proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.498.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
9.498.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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