Co-expression analysis

Gene ID	Zm.5987.1.A2_a_at
Gene name	cysteine protease 1 /// cysteine protease 1 /// cysteine proteinase Mir3
Homology with Arabidopsis	Similar to At5g43060: cysteine proteinase, putative / thiol protease, putative (HF=7e-14)
Module size	6 genes
NF	0.29
%ile	25.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.36	41.3	0.96	Zm.5987.1.A2_a_at	AF019147.1	cysteine protease 1 /// cysteine protease 1 /// cysteine proteinase Mir3	-	7e-14	At5g43060	cysteine proteinase, putative / thiol protease, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	ZmAffx.1135.2.A1_at	AW455736	-	-	2e-1	At1g04930	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.95	ZmAffx.919.1.A1_at	AI782958	Hypothetical protein LOC100216987	-	3e+0	At1g54720	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.94	ZmAffx.978.1.A1_at	AI833953	-	-	6e-23	Atcg00770	-	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.94	Zm.10833.1.A1_at	AY109775.1	-	-	5e+0	At5g64140	RPS28 (RIBOSOMAL PROTEIN S28)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.95	ZmAffx.76.1.S1_at	AI665214	-	-	3e+0	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	98.4	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.0	98.0	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.0	98.0	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.7	97.9	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.3	97.4	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.1	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.5	97.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage