CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.5962.1.S1_at

Gene name glyoxalase I
Homology with Arabidopsis Similar to At1g11840: ATGLX1 (GLYOXALASE I HOMOLOG) (HF=1e-17)

Module size 6 genes

NF 0.78

%ile 97.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.98 Zm.5962.1.S1_at AY241545.1 glyoxalase I - 1e-17 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) O.I. H.G. S.X.
0.91 99.0 0.98 Zm.3350.2.A1_at CA400679 U6 snRNA-associated Sm-like protein LSm4 - 7e-34 At5g27720 emb1644 (embryo defective 1644) O.I. H.G. S.X.
0.83 95.6 0.97 Zm.13188.3.S1_x_at BM076074 hypothetical protein LOC100193240 - 8e-6 At2g37270 ATRPS5B (RIBOSOMAL PROTEIN 5B) O.I. H.G. S.X.
0.73 89.9 0.98 Zm.6822.2.S1_a_at CO518852 receptor expression-enhancing protein 3 - 3e-2 At5g42560 abscisic acid-responsive HVA22 family protein O.I. H.G. S.X.
0.59 76.1 0.97 Zm.4811.1.A1_x_at CF624047 UDP-N-acetylglucosamine pyrophosphorylase - 6e-5 At2g35020 UTP--glucose-1-phosphate uridylyltransferase family protein O.I. H.G. S.X.
0.56 74.4 0.98 Zm.12898.1.A1_at CA401243 hypothetical protein LOC100274425 - 8e+0 At3g25950 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.0	0.98	Zm.5962.1.S1_at	AY241545.1	glyoxalase I	-	1e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	O.I.	H.G.	S.X.
0.91	99.0	0.98	Zm.3350.2.A1_at	CA400679	U6 snRNA-associated Sm-like protein LSm4	-	7e-34	At5g27720	emb1644 (embryo defective 1644)	O.I.	H.G.	S.X.
0.83	95.6	0.97	Zm.13188.3.S1_x_at	BM076074	hypothetical protein LOC100193240	-	8e-6	At2g37270	ATRPS5B (RIBOSOMAL PROTEIN 5B)	O.I.	H.G.	S.X.
0.73	89.9	0.98	Zm.6822.2.S1_a_at	CO518852	receptor expression-enhancing protein 3	-	3e-2	At5g42560	abscisic acid-responsive HVA22 family protein	O.I.	H.G.	S.X.
0.59	76.1	0.97	Zm.4811.1.A1_x_at	CF624047	UDP-N-acetylglucosamine pyrophosphorylase	-	6e-5	At2g35020	UTP--glucose-1-phosphate uridylyltransferase family protein	O.I.	H.G.	S.X.
0.56	74.4	0.98	Zm.12898.1.A1_at	CA401243	hypothetical protein LOC100274425	-	8e+0	At3g25950	-	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	94.0	0.95	Zm.1596.1.S1_at	AY104099.1	-	-	9e-1	At4g00880	auxin-responsive family protein	O.I.	H.G.	S.X.
0.73	89.9	0.96	Zm.1595.1.S1_at	CD967190	endochitinase A	-	6e-1	At3g54420	ATEP3	O.I.	H.G.	S.X.
0.71	88.2	0.97	Zm.15553.1.S1_at	CD219266	hypothetical protein LOC100193348	-	3e-7	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.67	85.8	0.95	Zm.17855.1.S1_a_at	BM080808	hypothetical protein LOC100192583 /// NADH-ubiquinone oxidoreductase 20 kDa subunit /// NADH dehydrogenase2	-	3e-64	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.
0.63	81.1	0.95	Zm.12796.1.A1_at	CA403456	hypothetical protein LOC100276862	-	2e-7	At1g07040	unknown protein	O.I.	H.G.	S.X.
0.63	81.1	0.97	Zm.3221.1.S1_at	CF035537	-	-	5e-39	At5g45140	NRPC2	O.I.	H.G.	S.X.
0.60	77.8	0.95	Zm.14039.1.A1_a_at	BM340531	plasminogen activator inhibitor 1 RNA-binding protein	-	4e-3	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.
0.57	75.1	0.98	Zm.7422.1.A1_at	CO525742	anthocyanidin 3-O-glucosyltransferase	-	2e+0	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.
0.56	74.4	0.92	Zm.1310.1.S1_at	BE345881	-	-	1e+0	At3g25400	-	O.I.	H.G.	S.X.
0.55	71.6	0.96	Zm.12209.1.S1_at	CO524348	hypothetical protein LOC100279875	-	2e-5	At4g36195	serine carboxypeptidase S28 family protein	O.I.	H.G.	S.X.
0.53	69.1	0.96	Zm.7425.1.A1_at	BM080593	-	-	4e-1	At4g09860	unknown protein	O.I.	H.G.	S.X.
0.53	69.1	0.97	Zm.17200.1.S1_at	CK145428	-	-	3e+0	At4g24060	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.
0.50	65.7	0.93	Zm.10218.1.A1_at	CD978382	hypothetical protein LOC100276798	-	4e-39	At1g29310	P-P-bond-hydrolysis-driven protein transmembrane transporter	O.I.	H.G.	S.X.
0.50	65.7	0.94			-	-				O.I.	H.G.	S.X.
0.50	65.7	0.97	Zm.14411.2.S1_at	AY104410.1	membrane steroid-binding protein 1	-	6e-10	At3g48890	ATMP2	O.I.	H.G.	S.X.
0.48	61.3	0.92	Zm.15954.1.A1_at	CK371273	hypothetical protein LOC100273974	-	4e-1	At1g71440	PFI (PFIFFERLING)	O.I.	H.G.	S.X.
0.48	61.3	0.95	Zm.7000.1.A1_at	CK827521	hypothetical protein LOC100275012 /// hypothetical protein LOC100276117 /// hypothetical protein LOC100277141 /// ustilago maydis induced11	-	5e+0	At2g42940	DNA-binding family protein	O.I.	H.G.	S.X.
0.48	61.3	0.92	Zm.10130.1.S1_at	AW225202	-	-	5e-1	At5g51880	iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.
0.47	59.9	0.97	Zm.14354.2.A1_a_at	CA399715	-	-	2e-9	At5g11560	catalytic	O.I.	H.G.	S.X.
0.46	58.4	0.93	Zm.13188.1.A1_x_at	AY103625.1	hypothetical protein LOC100193556	-	5e-32	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	O.I.	H.G.	S.X.
0.46	58.4	0.96	Zm.15526.1.A1_a_at	CD434172	structural constituent of ribosome	-	5e+0	At5g24780	VSP1 (VEGETATIVE STORAGE PROTEIN 1)	O.I.	H.G.	S.X.
0.43	52.8	0.94	Zm.13605.1.S1_at	CO522133	serine--glyoxylate aminotransferase	-	1e-14	At2g13360	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE)	O.I.	H.G.	S.X.
0.42	51.3	0.90	Zm.6273.1.A1_x_at	AY108611.1	patellin-5	-	2e-5	At3g51670	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.
0.41	49.7	0.95	Zm.2640.1.A1_at	CF628991	hypothetical protein LOC100217097	-	1e-1	At5g27400	unknown protein	O.I.	H.G.	S.X.
0.39	45.6	0.94	Zm.15800.4.A1_a_at	CK370627	actin-depolymerizing factor 3	-	3e-11	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.
0.39	45.6	0.94	Zm.4508.1.A1_at	CF013098	hypothetical protein LOC100192829	-	2e-20	At2g05990	MOD1 (MOSAIC DEATH 1)	O.I.	H.G.	S.X.
0.37	42.3	0.94	Zm.2373.1.A1_at	CF632228	hypothetical protein LOC100191352	-	3e-3	At5g06370	NC domain-containing protein	O.I.	H.G.	S.X.
0.35	38.9	0.95	Zm.3447.1.A1_at	BM379914	acid phosphatase/vanadium-dependent haloperoxidase related	-	2e+0	At5g26130	-	O.I.	H.G.	S.X.
0.35	38.9	0.95	Zm.3519.1.A1_at	AW053043	-	-	2e-1	At2g20613	unknown protein	O.I.	H.G.	S.X.
0.32	33.4	0.94	Zm.13205.3.A1_at	AI670579	-	-	6e-2	At1g04645	self-incompatibility protein-related	O.I.	H.G.	S.X.
0.31	31.6	0.94	Zm.12869.1.A1_at	CA400799	-	-	2e+0	At1g75830	LCR67	O.I.	H.G.	S.X.
0.30	29.8	0.92	Zm.13102.1.A1_at	CK985772	-	-	3e-3	At2g34070	unknown protein	O.I.	H.G.	S.X.
0.30	29.8	0.92	Zm.7012.4.S1_x_at	M95064.1	Ribosomal protein S8	-	5e-12	At5g59240	40S ribosomal protein S8 (RPS8B)	O.I.	H.G.	S.X.
0.29	28.1	0.92	Zm.2307.1.S1_at	AY104400.1	hypothetical protein LOC100279946	-	1e-17	At4g26100	CK1 (CASEIN KINASE 1)	O.I.	H.G.	S.X.
0.29	28.1	0.92	Zm.2532.1.A1_at	CF624878	-	-	1e+0	At5g21960	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.29	28.1	0.81	Zm.12061.1.A1_at	BM416884	DNA binding protein	-	8e-2	At5g46640	DNA-binding family protein	O.I.	H.G.	S.X.
0.29	28.1	0.83	Zm.3990.1.A1_at	CF244104	-	-	7e-3	At5g12240	unknown protein	O.I.	H.G.	S.X.
0.29	28.1	0.92	Zm.6822.2.A1_a_at	CO518852	-	-	3e-2	At5g42560	abscisic acid-responsive HVA22 family protein	O.I.	H.G.	S.X.
0.29	28.1	0.93	Zm.1837.1.S1_at	CF014756	cp protein	-	1e-2	At5g01610	unknown protein	O.I.	H.G.	S.X.
0.27	24.6	0.92	Zm.3986.1.A1_at	AY108648.1	vacuolar ATPase subunit H protein	-	4e-9	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.
0.27	24.6	0.86	Zm.16730.1.S1_at	CF675012	hypothetical protein LOC100194240	-	4e-5	At4g27470	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.26	22.7	0.86	Zm.17221.1.A1_at	CF626092	-	-	5e+0	At1g72600	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.26	22.7	0.89	Zm.6100.1.A1_at	AY111325.1	hypothetical protein LOC100277883	-	2e+1	At5g08380	AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1)	O.I.	H.G.	S.X.
0.26	22.7	0.94	Zm.3990.1.S1_at	CF244104	-	-	5e-4	At5g49830	-	O.I.	H.G.	S.X.
0.26	22.7	0.94	Zm.18503.1.A1_at	CO518080	-	-	2e+1	At3g12145	FLR1	O.I.	H.G.	S.X.
0.26	22.7	0.92	Zm.3439.1.A1_at	CF048515	hypothetical protein LOC100272944	-	3e-6	At1g60030	xanthine/uracil permease family protein	O.I.	H.G.	S.X.
0.26	22.7	0.93	Zm.3446.1.A1_at	BM341630	hypothetical protein LOC100192916	-	3e-16	At1g34220	unknown protein	O.I.	H.G.	S.X.
0.25	21.3	0.93	Zm.3148.1.A1_a_at	CA404774	hypothetical protein LOC100279326	-	4e-44	At5g08500	transmembrane CLPTM1 family protein	O.I.	H.G.	S.X.
0.25	21.3	0.94	Zm.3545.1.A1_at	BM267030	translation initiation factor 5A	-	4e-20	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.9 98.6 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0 98.4 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6 98.3 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1 98.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2 98.0 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2 91.3 GSM162264 Mutant 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
11.9	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.5962.1.S1_at
Gene name	glyoxalase I
Homology with Arabidopsis	Similar to At1g11840: ATGLX1 (GLYOXALASE I HOMOLOG) (HF=1e-17)
Module size	6 genes
NF	0.78
%ile	97.0

Co-expression analysis

Gene ID Zm.5962.1.S1_at Gene name glyoxalase I Homology with ArabidopsisSimilar to At1g11840: ATGLX1 (GLYOXALASE I HOMOLOG) (HF=1e-17) Module size 6 genes NF 0.78 %ile 97.0

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.5962.1.S1_at

Gene name glyoxalase I
Homology with Arabidopsis Similar to At1g11840: ATGLX1 (GLYOXALASE I HOMOLOG) (HF=1e-17)

Module size 6 genes

NF 0.78

%ile 97.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera