Co-expression analysis

Gene ID	Zm.5962.1.S1_at
Gene name	glyoxalase I
Homology with Arabidopsis	Similar to At1g11840: ATGLX1 (GLYOXALASE I HOMOLOG) (HF=1e-17)
Module size	6 genes
NF	0.78
%ile	97.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.5962.1.S1_at	AY241545.1	glyoxalase I	-	1e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.98	Zm.3350.2.A1_at	CA400679	U6 snRNA-associated Sm-like protein LSm4	-	7e-34	At5g27720	emb1644 (embryo defective 1644)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	Zm.13188.3.S1_x_at	BM076074	hypothetical protein LOC100193240	-	8e-6	At2g37270	ATRPS5B (RIBOSOMAL PROTEIN 5B)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.6822.2.S1_a_at	CO518852	receptor expression-enhancing protein 3	-	3e-2	At5g42560	abscisic acid-responsive HVA22 family protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.97	Zm.4811.1.A1_x_at	CF624047	UDP-N-acetylglucosamine pyrophosphorylase	-	6e-5	At2g35020	UTP--glucose-1-phosphate uridylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.12898.1.A1_at	CA401243	hypothetical protein LOC100274425	-	8e+0	At3g25950	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.9	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.2633.1.S1_at, orthologous to the query gene, Zm.5962.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	Ptp.2633.1.S1_at	At1g11840	hypothetical protein	-	2e-75	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.28909.1.S1_at	At1g11840	hypothetical protein	-	5e-2	At5g53390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.126034.1.S1_at	At1g11840	-	-	6e-27	At2g23150	NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.111671.1.S1_at	At1g11840	-	-	1e-5	At2g26510	PDE135 (pigment defective embryo 135)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.1601.19.S1_at	At1g11840	hypothetical protein	-	5e-4	At4g19390	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.19675.2.S1_s_at	At1g11840	hypothetical protein	-	4e-1	At1g43630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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