Co-expression analysis

Gene ID	Zm.5945.1.S1_a_at
Gene name	hypothetical protein LOC100279077
Homology with Arabidopsis	Similar to At3g63450: RNA binding / nucleic acid binding / nucleotide binding (HF=1e+0)
Module size	6 genes
NF	0.37
%ile	39.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.97	Zm.5945.1.S1_a_at	AY108142.1	hypothetical protein LOC100279077	-	1e+0	At3g63450	RNA binding / nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.12547.1.A1_at	AI622168	RNA binding protein	-	1e-3	At4g03110	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.3251.1.A1_at	CK145401	hypothetical protein LOC100280262	-	2e-3	At3g13180	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.8900.1.A1_at	CK827399	hypothetical protein LOC100272787	-	2e-13	At1g11750	CLPP6	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.4616.2.A1_at	CF637845	Hypothetical protein LOC100193318	-	9e-1	At3g25980	mitotic spindle checkpoint protein, putative (MAD2)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.6432.1.A1_at	BQ538326	hypothetical protein LOC100191156	-	7e-10	At5g64200	ATSC35	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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