| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|
0.60 | 77.8 | 0.98 | Zm.6584.1.S1_at | AI711906 | selT/selW/selH selenoprotein domain containing protein | - | 5e-1 | At1g01810 | unknown protein | O.I. | H.G. | S.X. | | 0.60 | 77.8 | 0.98 | Zm.3376.1.A1_at | AY104431.1 | hypothetical protein LOC100273263 | - | 5e-2 | At2g21730 | CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) | O.I. | H.G. | S.X. | | 0.57 | 75.1 | 0.98 | Zm.13261.1.A1_at | BM074679 | - | - | 6e-4 | At1g12340 | - | O.I. | H.G. | S.X. | | 0.56 | 74.4 | 0.98 | Zm.4862.1.S1_at | CF629721 | hypothetical protein LOC100273666 | - | 2e-27 | At4g27230 | HTA2 (histone H2A) | O.I. | H.G. | S.X. | | 0.50 | 65.7 | 0.98 | Zm.6244.1.A1_a_at | CF623141 | - | - | 8e-3 | At2g37650 | scarecrow-like transcription factor 9 (SCL9) | O.I. | H.G. | S.X. | | 0.50 | 65.7 | 0.98 | RPTR-Zm-NC_001669-1_at | RPTR-Zm-NC_001669-1 | - | - | | | - | O.I. | H.G. | S.X. | | 0.50 | 65.7 | 0.99 | Zm.6116.1.A1_at | CK347339 | - | - | 9e-16 | At3g02320 | RNA binding / tRNA (guanine-N2-)-methyltransferase | O.I. | H.G. | S.X. | | 0.50 | 65.7 | 0.99 | Zm.10852.1.A1_at | BM078475 | - | - | 5e-1 | At2g35240 | plastid developmental protein DAG, putative | O.I. | H.G. | S.X. | | 0.47 | 59.9 | 0.98 | Zm.7149.1.A1_at | BQ539356 | hypothetical protein LOC100275045 | - | 2e+0 | At3g20060 | UBC19 (ubiquitin-conjugating enzyme19) | O.I. | H.G. | S.X. | | 0.47 | 59.9 | 0.98 | Zm.15486.2.S1_at | AY108982.1 | - | - | 7e-20 | At1g71270 | POK (POKY POLLEN TUBE) | O.I. | H.G. | S.X. | | 0.44 | 55.7 | 0.99 | Zm.4825.1.A1_at | AI978181 | hypothetical protein LOC100272679 | - | 1e-1 | At1g42480 | unknown protein | O.I. | H.G. | S.X. | | 0.43 | 52.8 | 0.97 | Zm.10230.1.A1_at | BM333516 | hypothetical protein LOC100193446 | - | 6e+0 | At5g64816 | unknown protein | O.I. | H.G. | S.X. | | 0.43 | 52.8 | 0.98 | Zm.7098.1.A1_at | CK347551 | NADH-ubiquinone oxidoreductase 10.5 kDa subunit | - | 8e-6 | At5g47890 | NADH-ubiquinone oxidoreductase B8 subunit, putative | O.I. | H.G. | S.X. | | 0.42 | 51.3 | 0.98 | Zm.17145.1.S1_at | AY211982.1 | transparent leaf area peptide | - | 9e-1 | At3g29020 | MYB110 (myb domain protein 110) | O.I. | H.G. | S.X. | | 0.40 | 48.5 | 0.96 | Zm.6580.2.A1_at | AI619113 | succinyl-CoA ligase beta-chain | - | 4e-22 | At2g20420 | succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative | O.I. | H.G. | S.X. | | 0.40 | 48.5 | 0.97 | Zm.2199.4.A1_at | BG837924 | - | - | 6e-17 | At5g13420 | transaldolase, putative | O.I. | H.G. | S.X. | | 0.40 | 48.5 | 0.98 | Zm.14513.1.A1_at | CA828306 | Histone H3.2 | - | 6e-37 | At1g09200 | histone H3 | O.I. | H.G. | S.X. | | 0.40 | 48.5 | 0.98 | Zm.6984.8.A1_a_at | AI770763 | Hypothetical protein LOC100193571 | - | 4e+0 | At5g28615 | - | O.I. | H.G. | S.X. | | 0.40 | 48.5 | 0.99 | RPTR-Zm-M10961-2_at | RPTR-Zm-M10961-2 | - | - | | | - | O.I. | H.G. | S.X. | | 0.38 | 44.2 | 0.98 | Zm.5849.1.S1_at | AY108332.1 | carboxylic ester hydrolase | - | 2e-1 | At4g19420 | pectinacetylesterase family protein | O.I. | H.G. | S.X. | | 0.36 | 41.3 | 0.96 | Zm.15200.1.A1_at | BM332710 | - | - | 4e+0 | At5g56610 | dual specificity protein phosphatase family protein | O.I. | H.G. | S.X. | | 0.36 | 41.3 | 0.97 | Zm.9205.1.A1_at | BM382420 | - | - | 1e+0 | At1g76760 | ATY1 (ARABIDOPSIS THIOREDOXIN Y1) | O.I. | H.G. | S.X. | | 0.36 | 41.3 | 0.98 | Zm.2978.1.A1_at | CF020493 | - | - | 4e-10 | At1g18440 | peptidyl-tRNA hydrolase family protein | O.I. | H.G. | S.X. | | 0.36 | 41.3 | 0.99 | Zm.12201.1.A1_at | BM379502 | plastid ADP-glucose pyrophosphorylase large subunit | - | 3e-13 | At5g19220 | APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1) | O.I. | H.G. | S.X. | | 0.35 | 38.9 | 0.97 | RPTR-Zm-M62653-1_at | RPTR-Zm-M62653-1 | - | - | | | - | O.I. | H.G. | S.X. | | 0.35 | 38.9 | 0.98 | Zm.725.1.A1_at | AY107740.1 | hypothetical protein LOC100193467 | - | 7e-14 | At3g27740 | CARA (CARBAMOYL PHOSPHATE SYNTHETASE A) | O.I. | H.G. | S.X. | | 0.34 | 37.2 | 0.97 | Zm.9613.1.A1_at | AY106189.1 | - | - | 2e+0 | At4g23890 | unknown protein | O.I. | H.G. | S.X. | | 0.34 | 37.2 | 0.98 | Zm.15845.1.S1_at | CF244242 | hypothetical protein LOC100216966 | - | 5e+0 | At3g10850 | GLY2 | O.I. | H.G. | S.X. | | 0.34 | 37.2 | 0.97 | Zm.779.1.A1_at | BG842450 | RING-H2 finger protein | - | 8e+0 | At4g33020 | ZIP9 | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.98 | Zm.5141.1.A1_at | CF628146 | - | - | 2e-60 | At1g69960 | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) | O.I. | H.G. | S.X. | | 0.32 | 33.4 | 0.98 | Zm.16848.1.A1_at | CK369421 | hypothetical protein LOC100193258 | - | 6e-10 | At4g15000 | 60S ribosomal protein L27 (RPL27C) | O.I. | H.G. | S.X. | | 0.32 | 33.4 | 0.97 | Zm.1409.1.S1_at | AW787276 | pectinesterase inhibitor domain containing protein | - | 1e-1 | At1g34750 | protein phosphatase 2C, putative / PP2C, putative | O.I. | H.G. | S.X. | | 0.32 | 33.4 | 0.98 | Zm.16524.1.S1_at | AW054294 | hypothetical protein LOC100193178 | - | 1e+1 | At5g56110 | ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103) | O.I. | H.G. | S.X. | | 0.32 | 33.4 | 0.98 | Zm.530.1.S1_at | AF297046.1 | homocysteine S-methyltransferase-3 | - | 2e-10 | At3g25900 | HMT-1 | O.I. | H.G. | S.X. | | 0.31 | 31.6 | 0.98 | Zm.14412.1.S1_a_at | BM337383 | hypothetical protein LOC100194289 | - | 4e-15 | At4g18100 | 60S ribosomal protein L32 (RPL32A) | O.I. | H.G. | S.X. | | 0.30 | 29.8 | 0.98 | Zm.140.1.A1_at | L14063.1 | Zea root preferential4 | - | 3e+0 | At1g33030 | O-methyltransferase family 2 protein | O.I. | H.G. | S.X. | | 0.29 | 28.1 | 0.98 | Zm.1482.5.A1_a_at | AI714961 | hypothetical protein LOC100274856 | - | 1e-1 | At5g44980 | F-box family protein | O.I. | H.G. | S.X. | | 0.29 | 28.1 | 0.98 | Zm.7797.1.A1_at | BM079946 | mitochondrial import inner membrane translocase subunit Tim8 | - | 4e+0 | At5g44060 | unknown protein | O.I. | H.G. | S.X. | | 0.29 | 28.1 | 0.98 | Zm.3673.1.A1_at | AW037200 | - | - | 6e-21 | At1g14000 | VIK (VH1-INTERACTING KINASE) | O.I. | H.G. | S.X. | | 0.29 | 28.1 | 0.98 | Zm.4861.1.S1_at | AY109124.1 | - | - | 3e-1 | At5g26070 | hydroxyproline-rich glycoprotein family protein | O.I. | H.G. | S.X. | | 0.29 | 28.1 | 0.98 | Zm.14288.1.A1_at | BM348960 | - | - | 1e-37 | At1g60780 | HAP13 (HAPLESS 13) | O.I. | H.G. | S.X. | | 0.29 | 28.1 | 0.98 | Zm.13198.2.A1_a_at | CA400950 | - | - | 4e+0 | At3g43432 | unknown protein | O.I. | H.G. | S.X. | | 0.28 | 28.1 | 0.95 | Zm.2360.1.S1_at | CD434336 | hypothetical protein LOC100274191 | - | 2e-22 | At1g76490 | HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) | O.I. | H.G. | S.X. | | 0.28 | 28.1 | 0.97 | Zm.886.4.S1_x_at | BE051080 | hypothetical protein LOC100274379 | - | 2e+0 | At1g31750 | proline-rich family protein | O.I. | H.G. | S.X. | | 0.26 | 22.7 | 0.96 | Zm.2210.1.S1_at | AF384039.1 | silencing group B protein | - | 2e-24 | At1g03150 | GCN5-related N-acetyltransferase (GNAT) family protein | O.I. | H.G. | S.X. | | 0.26 | 22.7 | 0.98 | Zm.16524.8.A1_at | AI665572 | - | - | 3e-3 | At1g02405 | proline-rich family protein | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.97 | Zm.5038.1.S1_at | CF631928 | reverse transcriptase | - | 6e+0 | At4g08691 | unknown protein | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.97 | Zm.13727.1.A1_at | CK986131 | NADPH quinone oxidoreductase 1 | - | 2e-6 | At3g27890 | NQR (NADPH:QUINONE OXIDOREDUCTASE) | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.98 | Zm.15846.1.A1_s_at | AA979796 | - | - | 1e-4 | At1g52360 | coatomer protein complex, subunit beta 2 (beta prime), putative | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.98 | Zm.5962.4.A1_x_at | AI714685 | Glyoxalase I | - | 8e-7 | At1g11840 | ATGLX1 (GLYOXALASE I HOMOLOG) | O.I. | H.G. | S.X. | |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
| 10.3 | 98.4 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes |  |
| 9.6 | 98.3 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.1 | 98.2 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.6 | 97.9 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.5 | 97.8 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.1 | 97.7 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.7 | 97.6 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.4 | 97.5 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.1 | 97.4 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.3 | 96.1 | GSM320456 | protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
