Co-expression analysis

Gene ID	Zm.5819.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g29900: CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) (HF=6e-4)
Module size	6 genes
NF	0.47
%ile	58.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	61.3	0.98	Zm.5819.1.S1_at	AI649779	-	-	6e-4	At1g29900	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.3573.1.A1_at	CF629925	peroxidase 54	-	3e-3	At5g06720	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.98	Zm.6905.1.A1_a_at	AF461814.1	histone1a	-	6e-1	At4g04620	ATG8B (autophagy 8b)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.99	Zm.6217.1.A1_at	BE129797	plant-specific domain TIGR01589 family protein	-	7e-1	At1g28600	lipase, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.6218.1.A1_at	AI677344	developmentally-regulated GTP-binding protein 1	-	4e-58	At4g39520	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.99	RPTR-Zm-M57289-1_s_at	RPTR-Zm-M57289-1	-	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.6652.1.S1_at, orthologous to the query gene, Zm.5819.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	Ta.6652.1.S1_at	At1g29900	-	-	3e-6	At1g29900	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.6642.2.S1_at	At1g29900	-	-	4e+0	At5g64342	CPuORF39 (Conserved peptide upstream open reading frame 39)	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.131737.1.A1_at	At1g29900	-	-	6e-1	At4g31810	enoyl-CoA hydratase/isomerase family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.2358.3.S1_x_at	At1g29900	-	-	2e+0	At1g15385	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.2841.1.S1_s_at	At1g29900	-	-	2e-2	At4g20980	eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.22845.1.S1_at	At1g29900	tat binding protein	-	7e-54	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.30760.1.A1_x_at	At1g29900	-	-	3e+1	At4g24910	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.6642.1.S1_a_at	At1g29900	-	-	1e-18	At3g61760	ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.12540.1.S1_at	At1g29900	-	-	1e-3	At3g56150	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.1866.3.S1_at	At1g29900	-	-	4e-3	At1g12920	ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2)	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.12870.1.S1_at	At1g29900	-	-	8e-52	At1g04480	60S ribosomal protein L23 (RPL23A)	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.21547.1.S1_at	At1g29900	-	-	2e-3	At1g14980	CPN10 (CHAPERONIN 10)	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.21374.2.S1_at	At1g29900	-	-	8e-66	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.1406.1.S1_a_at	At1g29900	-	-	2e-10	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.659.5.S1_at	At1g29900	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.23012.1.S1_at	At1g29900	-	-	7e-20	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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