Co-expression analysis

Gene ID	Zm.5819.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g29900: CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) (HF=6e-4)
Module size	6 genes
NF	0.47
%ile	58.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	61.3	0.98	Zm.5819.1.S1_at	AI649779	-	-	6e-4	At1g29900	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.3573.1.A1_at	CF629925	peroxidase 54	-	3e-3	At5g06720	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.98	Zm.6905.1.A1_a_at	AF461814.1	histone1a	-	6e-1	At4g04620	ATG8B (autophagy 8b)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.99	Zm.6217.1.A1_at	BE129797	plant-specific domain TIGR01589 family protein	-	7e-1	At1g28600	lipase, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.6218.1.A1_at	AI677344	developmentally-regulated GTP-binding protein 1	-	4e-58	At4g39520	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.99	RPTR-Zm-M57289-1_s_at	RPTR-Zm-M57289-1	-	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig7213_at, orthologous to the query gene, Zm.5819.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	Contig7213_at	At1g29900	-	-	8e-27	At1g29900	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig26512_at	At1g29900	-	-	2e-13	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig15721_at	At1g29900	-	-	1e+0	At5g59360	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig18_s_at	At1g29900	-	-	8e-2	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.39	50.5	HT11N18r_s_at	At1g29900	-	-	1e+0	At1g16025	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig1321_at	At1g29900	-	-	3e-88	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig8961_at	At1g29900	-	-	1e-1	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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