Co-expression analysis

Gene ID Zm.5819.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g29900: CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) (HF=6e-4)
Module size 6 genes
NF 0.47
%ile 58.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4861.30.98Zm.5819.1.S1_atAI649779--6e-4At1g29900CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)O.I.H.G.S.X.
0.6785.80.99Zm.3573.1.A1_atCF629925peroxidase 54-3e-3At5g06720peroxidase, putativeO.I.H.G.S.X.
0.6381.10.98Zm.6905.1.A1_a_atAF461814.1histone1a-6e-1At4g04620ATG8B (autophagy 8b)O.I.H.G.S.X.
0.4658.40.99Zm.6217.1.A1_atBE129797plant-specific domain TIGR01589 family protein-7e-1At1g28600lipase, putativeO.I.H.G.S.X.
0.3844.20.99Zm.6218.1.A1_atAI677344developmentally-regulated GTP-binding protein 1-4e-58At4g39520GTP-binding protein, putativeO.I.H.G.S.X.
0.2828.10.99RPTR-Zm-M57289-1_s_atRPTR-Zm-M57289-1---O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.398.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.3641.2.S1_at, orthologous to the query gene, Zm.5819.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5778.8Gma.3641.2.S1_atAt1g29900--8e-6At1g29900CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)O.I.H.G.S.X.
0.4463.3Gma.7866.1.S1_atAt1g29900--3e-8At2g44065ribosomal protein L2 family proteinO.I.H.G.S.X.
0.2532.6Gma.3960.1.S1_atAt1g29900--6e-85At1g30120PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)O.I.H.G.S.X.
0.1721.2GmaAffx.73763.1.S1_atAt1g29900--2e-3At3g15000-O.I.H.G.S.X.
0.035.8Gma.10784.1.S1_atAt1g29900--7e-15At4g39880ribosomal protein L23 family proteinO.I.H.G.S.X.
0.035.8Gma.2203.1.A1_s_atAt1g29900--6e-15At1g64880ribosomal protein S5 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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