Co-expression analysis

Gene ID	Zm.578.1.S1_at
Gene name	MADS box protein 3
Homology with Arabidopsis	Similar to At5g60910: AGL8 (agamous-like 8) (HF=3e-3)
Module size	9 genes
NF	0.12
%ile	7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.5	0.94	Zm.578.1.S1_at	AF112150.1	MADS box protein 3	-	3e-3	At5g60910	AGL8 (agamous-like 8)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.6665.1.S1_at	AY104195.1	hypothetical protein LOC100274698	-	3e-7	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.3999.1.S1_at	CF024332	hypothetical protein LOC100276811	-	3e+0	At5g39860	PRE1 (PACLOBUTRAZOL RESISTANCE1)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.2181.1.S1_at	BF727788	-	-	9e-1	At2g10602	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.97	Zm.6644.2.A1_at	AY109212.1	-	-	4e+0	At5g42050	-	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.96	Zm.13169.1.A1_at	CA405223	-	-	4e+0	At1g10657	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.96	Zm.17901.1.S1_at	CK786928	-	-	7e-23	At3g62700	ATMRP10	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.96	Zm.10482.1.S1_at	AW330949	hypothetical protein LOC100280002	-	9e-1	At1g04680	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.96	Zm.4420.1.S1_at	CF628272	hypothetical protein LOC100273293	-	4e-15	At3g13450	DIN4 (DARK INDUCIBLE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.4	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.6	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.7	97.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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