Co-expression analysis

Gene ID	Zm.5767.1.A1_at
Gene name	hypothetical protein LOC100273619
Homology with Arabidopsis	Similar to At3g53850: - (HF=8e-2)
Module size	6 genes
NF	0.68
%ile	89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.96	Zm.5767.1.A1_at	AI714844	hypothetical protein LOC100273619	-	8e-2	At3g53850	-	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.854.1.A1_at	AW066950	vesicle-associated membrane protein-associated protein A	-	1e-2	At4g00170	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.96	Zm.1284.1.S1_at	BE344880	-	-	1e+1	At5g50760	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.96	Zm.17115.1.S1_at	CN844978	-	-	1e+0	At5g67490	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.18486.1.A1_at	AW461085	hypothetical protein LOC100276684	-	1e-1	At2g47760	ALG3	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.9384.1.A1_at	BM349149	-	-	6e+0	At4g28170	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.6	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1606928_at, orthologous to the query gene, Zm.5767.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	94.9	1606928_at	At3g53850	hypothetical protein LOC100262242	-	2e-1	At1g23145	RALFL2 (RALF-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1607683_at	At3g53850	hypothetical protein LOC100266122	-	2e-5	At1g47710	serpin, putative / serine protease inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.24	28.7	1606960_s_at	At3g53850	hypothetical protein LOC100256095	-	8e-1	At2g06555	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1609748_at	At3g53850	similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase	-	3e-1	At3g25440	RNA binding	O.I.	H.G.	S.X.	Please select
0.22	25.6	1617975_at	At3g53850	hypothetical protein LOC100259176	-	3e-16	At5g66420	-	O.I.	H.G.	S.X.	Please select
0.16	16.7	1622187_at	At3g53850	hypothetical protein LOC100262936	-	4e-119	At3g18190	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.16	16.7	1607818_at	At3g53850	hypothetical protein LOC100246164	-	2e-24	At2g30410	KIS (KIESEL)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1609058_at	At3g53850	hypothetical protein LOC100249608	-	4e-21	At2g39805	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	1611685_at	At3g53850	hypothetical protein LOC100242423	-	1e-87	At1g79570	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1610014_at	At3g53850	hypothetical protein LOC100265580	-	2e+0	At2g36620	RPL24A (ribosomal protein L24)	O.I.	H.G.	S.X.	Please select
0.12	12.1	1609057_at	At3g53850	-	-	1e+0	At3g04040	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	1610798_at	At3g53850	-	-	1e+0	At5g58420	40S ribosomal protein S4 (RPS4D)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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