Co-expression analysis

Gene ID	Zm.5723.1.A1_at
Gene name	fiber protein Fb2
Homology with Arabidopsis	Similar to At4g33740: unknown protein (HF=9e-3)
Module size	6 genes
NF	0.55
%ile	73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.99	Zm.5723.1.A1_at	BM079835	fiber protein Fb2	-	9e-3	At4g33740	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.3044.2.S1_a_at	AI881563	-	-	8e-1	At1g59835	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.3044.2.A1_at	AI881563	-	-	8e-1	At1g59835	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.15846.1.A1_s_at	AA979796	-	-	1e-4	At1g52360	coatomer protein complex, subunit beta 2 (beta prime), putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.15845.1.S1_at	CF244242	hypothetical protein LOC100216966	-	5e+0	At3g10850	GLY2	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.16537.1.S1_at	AY103617.1	40S ribosomal protein SA	-	4e-70	At1g72370	P40	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.9	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.5	96.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.2	96.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.891.16.A1_at, orthologous to the query gene, Zm.5723.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	93.8	PtpAffx.891.16.A1_at	At4g33740	tubulin, beta chain /// tubulin, beta chain	-	3e-53	At5g62700	TUB3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.39559.1.S1_at	At4g33740	hypothetical protein	-	3e+0	At3g45460	zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.2707.1.S1_at	At4g33740	hypothetical protein	-	1e-1	At1g78520	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.11483.2.A1_at	At4g33740	hypothetical protein	-	7e-2	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.6684.1.S1_at	At4g33740	hypothetical protein	-	1e+0	At5g63700	zinc finger (C3HC4 type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.97193.1.A1_at	At4g33740	hypothetical protein	-	1e-10	At3g25500	AFH1 (FORMIN HOMOLOGY 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	Ptp.2544.1.A1_at	At4g33740	hypothetical protein	-	1e-12	At3g24660	TMKL1 (transmembrane kinase-like 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.151413.1.S1_at	At4g33740	-	-	8e-2	At4g19985	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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