CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.5723.1.A1_at

Gene name fiber protein Fb2
Homology with Arabidopsis Similar to At4g33740: unknown protein (HF=9e-3)

Module size 6 genes

NF 0.55

%ile 73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.0 0.99 Zm.5723.1.A1_at BM079835 fiber protein Fb2 - 9e-3 At4g33740 unknown protein O.I. H.G. S.X.
0.73 89.9 0.99 Zm.3044.2.S1_a_at AI881563 - - 8e-1 At1g59835 unknown protein O.I. H.G. S.X.
0.73 89.9 0.99 Zm.3044.2.A1_at AI881563 - - 8e-1 At1g59835 unknown protein O.I. H.G. S.X.
0.67 85.8 0.99 Zm.15846.1.A1_s_at AA979796 - - 1e-4 At1g52360 coatomer protein complex, subunit beta 2 (beta prime), putative O.I. H.G. S.X.
0.67 85.8 0.99 Zm.15845.1.S1_at CF244242 hypothetical protein LOC100216966 - 5e+0 At3g10850 GLY2 O.I. H.G. S.X.
0.26 22.7 0.98 Zm.16537.1.S1_at AY103617.1 40S ribosomal protein SA - 4e-70 At1g72370 P40 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.9 98.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4 97.8 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9 97.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5 97.1 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.5 96.3 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM202292 B73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.2 96.0 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig8989_at, orthologous to the query gene, Zm.5723.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.81 92.8 Contig8989_at At4g33740 - - 1e-1 At5g49230 HRB1 (HYPERSENSITIVE TO RED AND BLUE) O.I. H.G. S.X.
0.46 61.0 Contig23619_at At4g33740 - - 1e-1 At3g10670 ATNAP7 O.I. H.G. S.X.
0.45 59.3 Contig25536_at At4g33740 - - 1e-1 At1g70120 unknown protein O.I. H.G. S.X.
0.39 50.5 Contig14264_at At4g33740 - - 2e+0 At1g48780 unknown protein O.I. H.G. S.X.
0.36 47.1 Contig7446_at At4g33740 - - 3e-1 At4g24240 WRKY7 O.I. H.G. S.X.
0.35 45.1 EBem05_SQ003_O06_at At4g33740 - - 1e+0 At2g17380 AP19 O.I. H.G. S.X.
0.33 42.6 Contig16455_at At4g33740 - - 1e-1 At3g46880 unknown protein O.I. H.G. S.X.
0.31 38.6 Contig13517_at At4g33740 - - 5e+0 At5g55893 unknown protein O.I. H.G. S.X.
0.30 37.0 Contig11346_at At4g33740 - - 8e-1 At1g67430 60S ribosomal protein L17 (RPL17B) O.I. H.G. S.X.
0.25 28.9 Contig16664_at At4g33740 - - 3e-8 At1g73180 eukaryotic translation initiation factor-related O.I. H.G. S.X.
0.25 28.9 Contig15852_at At4g33740 - - 1e-33 At1g29940 NRPA2 O.I. H.G. S.X.
0.21 22.6 Contig841_x_at At4g33740 - - 1e-35 At2g34420 LHB1B2 O.I. H.G. S.X.
0.21 22.6 Contig16579_at At4g33740 - - 2e+0 At4g14695 unknown protein O.I. H.G. S.X.
0.21 22.6 Contig20382_at At4g33740 - - 4e-1 At1g53910 RAP2.12 O.I. H.G. S.X.
0.20 21.1 Contig6963_at At4g33740 - - 5e-11 At5g02240 binding / catalytic/ coenzyme binding O.I. H.G. S.X.
0.19 19.6 HVSMEi0002I06r2_x_at At4g33740 - - 3e+0 At3g02220 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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