Co-expression analysis

Gene ID	Zm.5723.1.A1_at
Gene name	fiber protein Fb2
Homology with Arabidopsis	Similar to At4g33740: unknown protein (HF=9e-3)
Module size	6 genes
NF	0.55
%ile	73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.99	Zm.5723.1.A1_at	BM079835	fiber protein Fb2	-	9e-3	At4g33740	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.3044.2.S1_a_at	AI881563	-	-	8e-1	At1g59835	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.3044.2.A1_at	AI881563	-	-	8e-1	At1g59835	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.15846.1.A1_s_at	AA979796	-	-	1e-4	At1g52360	coatomer protein complex, subunit beta 2 (beta prime), putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.15845.1.S1_at	CF244242	hypothetical protein LOC100216966	-	5e+0	At3g10850	GLY2	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.16537.1.S1_at	AY103617.1	40S ribosomal protein SA	-	4e-70	At1g72370	P40	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.9	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.5	96.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.2	96.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.85644.1.S1_s_at, orthologous to the query gene, Zm.5723.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.8	GmaAffx.85644.1.S1_s_at	At4g33740	-	-	6e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.64	83.4	Gma.1793.2.S1_at	At4g33740	-	-	1e-3	At3g56860	UBP1 interacting protein 2a (UBA2a)	O.I.	H.G.	S.X.	Please select
0.59	79.5	Gma.2892.2.S1_a_at	At4g33740	-	-	5e-47	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.11321.3.S1_a_at	At4g33740	-	-	4e-49	At1g20260	hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.7498.3.S1_at	At4g33740	-	-	4e-71	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please select
0.49	68.3	GmaAffx.56431.1.S1_at	At4g33740	-	-	1e-9	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select
0.49	68.3	Gma.17372.3.S1_at	At4g33740	-	-	3e+0	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	O.I.	H.G.	S.X.	Please select
0.48	67.7	GmaAffx.75701.1.S1_at	At4g33740	-	-	6e-14	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.5135.2.S1_at	At4g33740	-	-	2e-42	At5g08500	transmembrane CLPTM1 family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.2892.2.S1_at	At4g33740	-	-	5e-47	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.15960.1.S1_at	At4g33740	-	-	3e-22	At4g01320	ATSTE24	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.93437.1.S1_s_at	At4g33740	-	-	3e-23	At5g10780	-	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.56431.1.S1_x_at	At4g33740	-	-	1e-9	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.93348.1.S1_s_at	At4g33740	-	-	3e-59	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.71733.1.S1_at	At4g33740	-	-	1e-52	At2g21470	SAE2 (SUMO-ACTIVATING ENZYME 2)	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.82721.1.S1_at	At4g33740	-	-	6e-67	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.91112.1.S1_s_at	At4g33740	ABC transporter-like protein	-	5e-28	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.9706.3.S1_x_at	At4g33740	-	-	2e-5	At2g39840	TOPP4	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.2211.2.S1_x_at	At4g33740	-	-	1e-9	At3g53520	UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.5672.9.S1_at	At4g33740	-	-	2e-102	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.7498.2.S1_at	At4g33740	-	-	3e-7	At1g25490	RCN1 (ROOTS CURL IN NPA)	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.478.5.S1_at	At4g33740	-	-	4e+0	At4g00467	-	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.93348.1.S1_x_at	At4g33740	-	-	3e-59	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.68394.1.S1_at	At4g33740	-	-	3e+0	At5g03660	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.93138.1.S1_s_at	At4g33740	-	-	2e-27	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.76766.1.S1_at	At4g33740	-	-	2e-21	At2g33340	nucleotide binding / ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.91235.1.S1_s_at	At4g33740	-	-	8e-45	At4g31300	PBA1	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.2892.1.S1_at	At4g33740	-	-	3e-36	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.90062.1.S1_s_at	At4g33740	-	-	1e-108	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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