Co-expression analysis

Gene ID	Zm.5715.1.A2_at
Gene name	O-methyltransferase ZRP4
Homology with Arabidopsis	Similar to At5g25752: RBL11 (RHOMBOID-LIKE PROTEIN 11) (HF=3e+0)
Module size	8 genes
NF	0.58
%ile	77.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	52.8	0.98	Zm.5715.1.A2_at	BI542710	O-methyltransferase ZRP4	-	3e+0	At5g25752	RBL11 (RHOMBOID-LIKE PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.6605.1.A1_at	AI444684	hypothetical protein LOC100191572	-	3e+0	At1g22470	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.98	Zm.18825.1.A1_at	CO527281	hypothetical protein LOC100194340	-	8e+0	At3g17675	copper ion binding / electron carrier	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.98	Zm.14877.1.S1_at	CB179260	-	-	1e+0	At1g59700	ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.98	Zm.4965.1.A1_at	CF018804	cyclase/dehydrase family protein	-	2e-1	At5g46790	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.1377.1.A1_at	BG873710	hypothetical protein LOC100275345	-	2e+0	At2g46460	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.5207.1.S1_at	AY107278.1	hypothetical protein LOC100192596	-	5e-23	At4g03120	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.13771.1.A1_at	AY105545.1	hypothetical protein LOC100216812	-	1e-17	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.8	88.9	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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