Co-expression analysis

Gene ID Zm.5713.1.A1_at
Gene name hypothetical protein LOC100280095
Homology with ArabidopsisSimilar to At3g57490: 40S ribosomal protein S2 (RPS2D) (HF=1e-1)
Module size 17 genes
NF 0.73
%ile 94.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6582.10.94Zm.5713.1.A1_atCA404559hypothetical protein LOC100280095-1e-1At3g5749040S ribosomal protein S2 (RPS2D)O.I.H.G.S.X.
0.8996.80.96Zm.2176.1.S1_atAY111425.1--4e+0At1g54215proline-rich family proteinO.I.H.G.S.X.
0.8294.60.95Zm.8306.1.A1_atBM073602--3e-4At5g01960zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.8094.00.96Zm.14071.1.A1_atAY109092.1hypothetical protein LOC100279213-2e-16At5g19330armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.7992.80.95Zm.6467.1.A1_atAI692044--2e+0At5g59470PQ-loop repeat family protein / transmembrane family proteinO.I.H.G.S.X.
0.7992.80.96Zm.6367.1.S1_atBM259420--3e-1At4g26200ACS7O.I.H.G.S.X.
0.7590.80.95Zm.4333.1.A1_atAY104402.1--9e-20At4g33090APM1 (AMINOPEPTIDASE M1)O.I.H.G.S.X.
0.7490.30.96Zm.4882.2.S1_atCK985806--9e+0At3g62920unknown proteinO.I.H.G.S.X.
0.7490.30.96Zm.13599.1.A1_atAY107721.1hypothetical protein LOC100276781-7e-1At5g62400unknown proteinO.I.H.G.S.X.
0.6986.50.96Zm.17163.1.A1_atBM378304--1e+0At2g24870self-incompatibility protein-relatedO.I.H.G.S.X.
0.6886.10.95Zm.4882.1.S1_atBE644445hypothetical protein LOC100193470 /// hypothetical protein LOC100273280 /// yabby15-2e-11At4g00180YAB3 (YABBY3)O.I.H.G.S.X.
0.6886.10.96Zm.6139.2.A1_atCF018619methionyl-tRNA synthetase-1e-5At2g40660tRNA-binding region domain-containing proteinO.I.H.G.S.X.
0.6886.10.96Zm.3468.1.A1_atBM337587FYVE zinc finger family protein-1e-2At2g26210ankyrin repeat family proteinO.I.H.G.S.X.
0.6582.10.95Zm.268.1.A1_atU17979.1eukaryotic initiation factor 4A-1e-110At3g13920EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)O.I.H.G.S.X.
0.6381.10.95Zm.6945.1.A1_atAY104754.1vacuolar proton pump3-2e-101At1g78900VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)O.I.H.G.S.X.
0.6077.80.96Zm.4746.1.A1_atBG266536--3e-3At1g58030CAT2 (CATIONIC AMINO ACID TRANSPORTER 2)O.I.H.G.S.X.
0.5976.10.95Zm.6316.1.A1_atAI691367--2e+0At5g22430unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.998.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
9.298.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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