Co-expression analysis

Gene ID Zm.5697.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g07050: CAS1 (cycloartenol synthase 1) (HF=5e-25)
Module size 6 genes
NF 0.27
%ile 23.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.90Zm.5697.2.S1_atAI834433--5e-25At2g07050CAS1 (cycloartenol synthase 1)O.I.H.G.S.X.
0.4455.70.93Zm.1506.1.A1_atX82184.1defence-related protein-1e-1At3g04720PR4 (PATHOGENESIS-RELATED 4)O.I.H.G.S.X.
0.4048.50.91Zm.17878.1.S1_atCK787018--1e-3At1g28060small nuclear ribonucleoprotein family protein / snRNP family proteinO.I.H.G.S.X.
0.2318.60.92Zm.9567.1.S1_atBM378205--5e-10At5g10780-O.I.H.G.S.X.
0.1710.60.91Zm.17961.1.A1_atCK826694--1e-4At1g79050DNA repair protein recAO.I.H.G.S.X.
0.136.80.93Zm.1297.1.S1_atBE345371hypothetical protein LOC100276762-1e+0At1g23670unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.698.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM385709Deep-sowing 10d treatment TIBA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os02g0139700, orthologous to the query gene, Zm.5697.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4458.1Os02g0139700At2g07050-Cycloartenol synthase (EC 5.4.99.8)2e-24At2g07050CAS1 (cycloartenol synthase 1)O.I.H.G.S.X.
0.2219.4Os06g0184300At2g07050-Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein6e-15At5g57990UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23)O.I.H.G.S.X.
0.1611.3Os05g0482600At2g07050-WD40-like domain containing protein3e-28At3g54190-O.I.H.G.S.X.
0.094.9Os01g0683100At2g07050-35570-33019 (AAA1) (Katanin 1)9e-66At1g80350ERH3 (ECTOPIC ROOT HAIR 3)O.I.H.G.S.X.
0.042.0Os11g0199600At2g07050-Zn-finger, CCHC type domain containing protein7e-1At5g61890AP2 domain-containing transcription factor family proteinO.I.H.G.S.X.
0.042.0Os01g0150200At2g07050-Protein tyrosine phosphatase-like protein, PTPLAfamily protein2e-13At5g10480PAS2 (PASTICCINO 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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