Co-expression analysis

Gene ID	Zm.5654.1.A1_at
Gene name	hypothetical protein LOC100280184
Homology with Arabidopsis	Similar to At5g61200: - (HF=5e-1)
Module size	6 genes
NF	0.48
%ile	59.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.5654.1.A1_at	BG874013	hypothetical protein LOC100280184	-	5e-1	At5g61200	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.18527.1.A1_at	CF630266	-	-	9e-1	At3g25110	AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.10125.2.A1_x_at	BM380760	cytidine/deoxycytidylate deaminase family protein	-	4e+0	At2g46230	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.2383.1.A1_at	BG842498	hypothetical protein LOC100275670	-	5e+0	At2g13820	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	ZmAffx.1007.1.S1_at	AI881371	-	-	1e+1	At2g34570	MEE21 (maternal effect embryo arrest 21)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.4271.2.A1_at	AY103821.1	Isoflavone reductase-like1	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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