Co-expression analysis

Gene ID Zm.5646.2.A1_x_at
Gene name hypothetical protein LOC100191650
Homology with ArabidopsisSimilar to At1g04750: VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) (HF=3e-41)
Module size 6 genes
NF 0.63
%ile 84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.5646.2.A1_x_atAW257823hypothetical protein LOC100191650-3e-41At1g04750VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)O.I.H.G.S.X.
0.5775.10.98Zm.5372.1.S1_atAW000380secondary cell wall-related glycosyltransferase family 8-5e-15At3g18660PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1)O.I.H.G.S.X.
0.5571.60.98Zm.16836.1.A1_atCF629974hypothetical protein LOC100193667-7e-2At1g80400zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5571.60.98Zm.5959.1.A1_atAI665952--1e-6At4g30720electron carrier/ oxidoreductaseO.I.H.G.S.X.
0.4759.90.98Zm.14125.1.A1_atCO533246hypothetical protein LOC100273725-3e-4At3g51280male sterility MS5, putativeO.I.H.G.S.X.
0.4455.70.98Zm.13835.1.S1_atCO518326hypothetical protein LOC100193923-2e+0At1g27640unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.998.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
1.788.2GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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