Co-expression analysis

Gene ID	Zm.5644.1.S1_at
Gene name	hypothetical protein LOC100276211
Homology with Arabidopsis	Similar to At3g12140: emsy N terminus domain-containing protein / ENT domain-containing protein (HF=1e-8)
Module size	8 genes
NF	0.48
%ile	60.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.86	Zm.5644.1.S1_at	AY108155.1	hypothetical protein LOC100276211	-	1e-8	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.92	Zm.1743.1.A1_at	BG840944	IAA19 - auxin-responsive Aux/IAA family member	-	2e-9	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.93	Zm.974.1.A1_at	BE638677	-	-	6e-1	At5g47060	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.90	Zm.9314.1.A1_at	CK827497	hypothetical protein LOC100192585	-	2e-31	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.89	Zm.14322.1.A1_at	AY104923.1	-	-	5e-2	At2g03160	ASK19 (ARABIDOPSIS SKP1-LIKE 19)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.91	Zm.17834.1.S1_at	BM072688	hypothetical protein LOC100276988	-	4e-1	At2g28230	-	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.91	Zm.1860.1.A1_at	AY106976.1	gibberellin-regulated protein 2	-	2e+0	At1g22690	gibberellin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.89	Zm.1562.1.A1_at	BM074498	hypothetical protein LOC100193316	-	5e+0	At5g49015	Expressed protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.5	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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