Co-expression analysis

Gene ID	Zm.5643.1.A1_at
Gene name	mitogen activated protein kinase 6
Homology with Arabidopsis	Similar to At5g19010: MPK16 (HF=6e-55)
Module size	21 genes
NF	0.58
%ile	76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.5	0.76	Zm.5643.1.A1_at	AY425817.1	mitogen activated protein kinase 6	-	6e-55	At5g19010	MPK16	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.89	Zm.1638.1.S1_at	CF628096	hypothetical protein LOC100192625	-	2e-15	At4g27090	60S ribosomal protein L14 (RPL14B)	O.I.	H.G.	S.X.	Please select
0.78	92.5	0.93	Zm.12244.2.S1_at	AI668243	-	-	9e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.91	Zm.15903.2.A1_at	BM266872	-	-	2e-11	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.85	Zm.8981.1.S1_at	BM378421	early responsive to dehydration protein	-	6e-2	At1g30360	ERD4 (early-responsive to dehydration 4)	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.85	ZmAffx.256.1.S1_at	AI670296	-	-	3e+0	At5g37690	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.90	Zm.144.1.S1_x_at	U10696.1	metallothionein2	-	2e+1	At5g38344	transmembrane receptor	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.91	Zm.654.1.A1_at	AY029561.1	hypothetical LOC542071	-	1e-3	At5g35330	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.92	Zm.1818.1.S1_a_at	BM073458	hypothetical protein LOC100194358	-	5e+0	At5g48545	histidine triad family protein / HIT family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.89	RPTR-Zm-J01636-1_at	RPTR-Zm-J01636-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.90	RPTR-Zm-X17220-1_at	RPTR-Zm-X17220-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.89	Zm.15807.1.A1_at	AY111212.1	-	-	1e+0	At4g19590	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.90	Zm.16502.5.A1_at	AI586439	hypothetical protein LOC100280237	-	1e-12	At5g61780	tudor domain-containing protein / nuclease family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.90	RPTR-Zm-J01347-4_at	RPTR-Zm-J01347-4	-	-			-	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.90	Zm.17312.1.A1_at	CK369501	-	-	5e+0	At5g39700	MYB89 (myb domain protein 89)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.92	Zm.16892.3.S1_a_at	CB281906	calmodulin binding protein	-	5e-3	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.94	Zm.2165.1.A1_at	BM072875	hypothetical protein LOC100278701	-	6e+0	At5g25390	SHN2 (shine2)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.89	Zm.17754.1.A1_at	CK826899	-	-	2e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.88	Zm.13661.1.A1_at	AY107142.1	-	-	2e+0	At4g25710	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.89	Zm.9514.1.A1_at	BM269476	hypothetical protein LOC100279704	-	3e-1	At2g14500	F-box family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.92	Zm.3966.1.A1_at	AI795713	-	-	5e-2	At1g56310	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	98.6	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
3.4	94.9	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
3.2	94.5	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.8	93.5	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
2.6	92.9	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
2.3	91.7	GSM253251	ZM_24h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.1	90.8	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.1	90.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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