Co-expression analysis

Gene ID	Zm.5641.1.A1_at
Gene name	Na+/H+ antiporter, probable CP0838
Homology with Arabidopsis	Similar to At3g19490: ATNHD1 (HF=1e-47)
Module size	20 genes
NF	0.36
%ile	38.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.90	Zm.5641.1.A1_at	AI629775	Na+/H+ antiporter, probable CP0838	-	1e-47	At3g19490	ATNHD1	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.93	Zm.3503.1.A1_at	BM347620	hypothetical protein LOC100217151	-	2e+0	At2g29580	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	Zm.5048.4.A1_at	AY110862.1	Hypothetical protein LOC100192937	-	6e+0	At5g54850	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	Zm.8787.1.A1_at	CB350639	-	-	3e-1	At3g01170	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.94	Zm.803.1.A1_at	CF625813	hypothetical protein LOC100274731	-	6e-1	At5g25210	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.94	Zm.5707.1.S1_at	CF631594	copper chaperone	-	3e-2	At1g66240	ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.92	Zm.18533.1.A1_at	CO522696	scramblase family protein	-	7e-1	At1g47510	5PTASE11 (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 11)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.94	Zm.2550.1.S1_at	CF632382	cinnamoyl CoA reductase1	-	2e-1	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.93	Zm.6995.1.A1_at	BM336044	prefoldin subunit 3	-	6e-10	At5g49510	PDF3 (PREFOLDIN 3)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.92	Zm.16454.1.S1_at	CF349076	hypothetical protein LOC100272380	-	2e-4	At2g02370	-	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.95	Zm.19147.2.S1_x_at	AY112227.1	-	-	2e+0	At1g59833	-	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.93	Zm.13138.1.S1_at	CA404833	-	-	5e-14	At3g03050	CSLD3 (CELLULOSE SYNTHASE-LIKE D3)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.94	Zm.5378.1.A1_at	CA404486	-	-	1e-39	At4g26720	PPX1 (PROTEIN PHOSPHATASE X 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.93	Zm.5401.2.A1_at	AY104186.1	hypothetical protein LOC100274064	-	9e-121	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.93	Zm.17572.1.A1_at	BM269508	-	-	1e-10	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.94	Zm.10839.1.S1_at	CF637878	-	-	4e+0	At5g08290	YLS8	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.94	Zm.369.1.A1_at	AF035460.1	low molecular weight heat shock protein precursor	-	9e-3	At4g25200	ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.94	Zm.8285.1.S1_at	CA826983	hypothetical protein LOC100276185	-	6e-3	At4g10810	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.94	Zm.3565.1.A1_at	AW042565	-	-	5e-13	At1g54590	splicing factor Prp18 family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.95	Zm.17967.1.A1_at	CK827121	-	-	3e-5	At4g09520	catalytic/ metal ion binding / phosphoglycerate mutase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage