Co-expression analysis

Gene ID	Zm.5605.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g18680: HNH endonuclease domain-containing protein (HF=1e+0)
Module size	6 genes
NF	0.03
%ile	1.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.78	Zm.5605.1.S1_at	CO528780	-	-	1e+0	At1g18680	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.85	Zm.5604.1.A1_at	CK370662	TPR domain containing protein	-	3e-2	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.85	Zm.5600.2.A1_x_at	BM333382	-	-	2e+0	At1g19050	ARR7 (RESPONSE REGULATOR 7)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.85	Zm.12177.1.A1_at	BM380114	hypothetical protein LOC100193797	-	3e-1	At2g05752	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.81	Zm.4035.1.A1_at	AI834003	hypothetical protein LOC100279841	-	9e-4	At3g11110	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
-	0.1	0.79	Zm.17981.1.A1_at	CK827727	hypothetical protein LOC100277738	-	5e+0	At2g47520	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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