Co-expression analysis

Gene ID Zm.5600.1.A1_at
Gene name thioredoxin H-type 5
Homology with ArabidopsisSimilar to At2g06850: EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) (HF=4e-1)
Module size 6 genes
NF 0.34
%ile 33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5976.10.97Zm.5600.1.A1_atBG873946thioredoxin H-type 5-4e-1At2g06850EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE)O.I.H.G.S.X.
0.6077.80.97Zm.3167.1.S1_s_atU89342.1phosphoglucomutase 2-1e-49At1g23190phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putativeO.I.H.G.S.X.
0.4251.30.97ZmAffx.196.1.A1_atAI668462hypothetical protein LOC100278421-5e-5At3g15820phosphatidic acid phosphatase-related / PAP2-relatedO.I.H.G.S.X.
0.3437.20.97ZmAffx.743.1.A1_atAI745735--8e-1At4g28170unknown proteinO.I.H.G.S.X.
0.2724.60.97Zm.822.1.A1_atCO526761--2e+0At5g60490FLA12O.I.H.G.S.X.
0.136.80.97Zm.4929.2.A1_a_atAI586452hypothetical protein LOC100192571-3e+0At5g28620protein kinase C-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.398.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM385709Deep-sowing 10d treatment TIBA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g06850, orthologous to the query gene, Zm.5600.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3338.1At2g06850815247EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE)endoxyloglucan transferase (EXGT-A1) geneO.I.H.G.S.X.
0.5065.3At1g03870839384FLA9 (FASCICLIN-LIKE ARABINOOGALACTAN 9)fasciclin-like arabinogalactan-protein 9 (Fla9)O.I.H.G.S.X.
0.5065.3At4g12730826885FLA2 (FASCICLIN-LIKE ARABINOGALACTAN 2)AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cdsO.I.H.G.S.X.
0.5065.3At5g44020834425acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:chloroplast, vacuole, membrane;PBOO.I.H.G.S.X.
0.2522.6At4g23820828482glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.H.G.S.X.
0.2014.4At4g00400828140GPAT8 (glycerol-3-phosphate acyltransferase 8)Involved in cutin assembly. Is functional redundant of GPAT4.O.I.H.G.S.X.
0.1912.7At3g43720823481protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane, membrane;PO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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