Co-expression analysis

Gene ID	Zm.5584.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g36590: ProT3 (PROLINE TRANSPORTER 3) (HF=1e-2)
Module size	6 genes
NF	0.15
%ile	10.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.94	Zm.5584.1.S1_at	AW424391	-	-	1e-2	At2g36590	ProT3 (PROLINE TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.5583.1.A1_at	AI629453	-	-	1e+0	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.14094.1.S1_at	CO519882	S-glutathione dehydrogenase/class III alcohol dehydrogenase	-	3e-3	At5g63620	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.1275.1.S1_at	CD953604	hypothetical protein LOC100280069	-	3e+0	At4g31580	SRZ-22	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.97	Zm.1033.1.A1_at	BE640167	-	-	1e+0	At3g50780	-	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.96	Zm.6182.1.S1_at	CF039823	60S ribosomal protein L29	-	1e-21	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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