Co-expression analysis

Gene ID	Zm.5565.1.S2_at
Gene name	hypothetical protein LOC100194102
Homology with Arabidopsis	Similar to At4g39090: RD19 (RESPONSIVE TO DEHYDRATION 19) (HF=9e-11)
Module size	24 genes
NF	0.39
%ile	43.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	90.3	0.94	Zm.5565.1.S2_at	CF631185	hypothetical protein LOC100194102	-	9e-11	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.96	Zm.6763.3.S1_at	AY105013.1	-	-	1e+0	At3g59845	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.96	Zm.9659.1.A1_at	BM350799	-	-	4e-1	At1g69510	-	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.95	Zm.3515.1.A1_at	CA404890	hypothetical protein LOC100194050	-	1e-6	At2g43180	catalytic	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.96	Zm.7914.1.A1_at	AY103800.1	hypothetical protein LOC100277669	-	5e-11	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.17628.1.S1_at	CN845468	-	-	6e-17	At2g34560	katanin, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.14133.1.A1_at	CF633639	gibberellin receptor GID1L2	-	7e+0	At4g03113	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.97	Zm.3620.1.S1_at	AW076176	-	-	5e+0	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.17084.1.S1_at	BE056028	-	-	3e+0	At2g40020	-	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.96	Zm.15722.2.A1_at	CA404232	hypothetical protein LOC100273877	-	2e+0	At3g06110	MKP2 (MAPK PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.8865.1.A1_at	BM267927	hypothetical protein LOC100191271	-	3e-9	At5g35460	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.3656.2.S1_a_at	CF050698	hypothetical protein LOC100273489	-	4e-58	At5g64270	splicing factor, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.95	Zm.3553.1.S1_at	AY112170.1	Hypothetical protein LOC100217242	-	2e+1	At5g03345	-	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.96	Zm.38.1.S1_at	M60215.1	ser/thr protein phosphatase1	-	1e-12	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.94	Zm.990.1.A1_at	CF636054	-	-	1e+1	At5g44345	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.4304.1.S1_at	AI834719	-	-	1e-3	At3g18600	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.847.1.S1_at	L00973.1	hypothetical protein LOC100274400	-	1e-1	At1g02360	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.94	Zm.10403.2.A1_at	CO522248	transmembrane 9 superfamily protein member 2	-	8e-32	At5g35160	-	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.1056.1.S1_at	AW120162	ribosomal protein S22 homolog	-	3e-17	At5g62300	40S ribosomal protein S20 (RPS20C)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.17366.1.S1_s_at	CK371241	-	-	1e+1	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.5273.1.A1_at	BM497669	hypothetical protein LOC100272886	-	7e-1	At2g39990	EIF2	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.5676.1.A1_at	AY103939.1	-	-	3e-1	At5g14710	-	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.5965.1.A1_at	AI665966	Hypothetical protein LOC100192560	-	2e+0	At5g19140	AILP1	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.97	Zm.4137.1.S1_at	AI855128	-	-	2e+0	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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