Co-expression analysis

Gene ID Zm.5565.1.S1_at
Gene name cysteine protease1
Homology with ArabidopsisSimilar to At4g39090: RD19 (RESPONSIVE TO DEHYDRATION 19) (HF=9e-11)
Module size 8 genes
NF 0.45
%ile 54.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.20.96Zm.5565.1.S1_atD45402.1cysteine protease1-9e-11At4g39090RD19 (RESPONSIVE TO DEHYDRATION 19)O.I.H.G.S.X.
0.5674.40.96Zm.1013.2.A1_atCK347213nucleic acid binding protein-4e-1At4g21450vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.5267.30.96Zm.17166.1.A1_atCK370745--4e+0At5g65730xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeO.I.H.G.S.X.
0.5065.70.97Zm.9311.1.A1_a_atBG842505hypothetical protein LOC100274965-5e+0At2g29180unknown proteinO.I.H.G.S.X.
0.4352.80.97Zm.9236.1.A1_atBM339258--8e-2At3g01860unknown proteinO.I.H.G.S.X.
0.4048.50.96Zm.13199.1.S1_atCA404238hypothetical protein LOC100191826-2e-7At3g17465RPL3P (RIBOSOMAL PROTEIN L3 PLASTID)O.I.H.G.S.X.
0.3233.40.96Zm.5362.1.A1_atAW498436hypothetical protein LOC100193109-1e-1At1g79860ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)O.I.H.G.S.X.
0.3131.60.96Zm.13185.1.A1_atAY104045.1--1e-22At3g13060-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.396.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM202290Mo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
4.296.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.995.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.995.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM202303Mo17 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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