CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.5542.1.S1_at

Gene name Hypothetical protein LOC100193112
Homology with Arabidopsis Similar to At3g15140: exonuclease family protein (HF=7e-4)

Module size 6 genes

NF 0.57

%ile 76.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 65.7 0.97 Zm.5542.1.S1_at CO518213 Hypothetical protein LOC100193112 - 7e-4 At3g15140 exonuclease family protein O.I. H.G. S.X.
0.71 88.2 0.96 Zm.3832.1.S1_at AY112267.1 actin-depolymerizing factor - 1e-13 At4g25590 ADF7 (actin depolymerizing factor 7) O.I. H.G. S.X.
0.57 75.1 0.96 Zm.3058.1.A1_at BM338821 glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform - 6e-36 At3g27300 G6PD5 (glucose-6-phosphate dehydrogenase 5) O.I. H.G. S.X.
0.50 65.7 0.97 Zm.6743.3.S1_at AY104585.1 hypothetical protein LOC100216801 - 2e-10 At3g02420 unknown protein O.I. H.G. S.X.
0.50 65.7 0.97 Zm.9017.1.A1_at BM338660 Hypothetical protein LOC100193460 - 2e+0 At1g64290 F-box protein-related O.I. H.G. S.X.
0.44 55.7 0.96 Zm.4613.1.A1_at CK826972 - - 5e-1 At1g73770 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	65.7	0.97	Zm.5542.1.S1_at	CO518213	Hypothetical protein LOC100193112	-	7e-4	At3g15140	exonuclease family protein	O.I.	H.G.	S.X.
0.71	88.2	0.96	Zm.3832.1.S1_at	AY112267.1	actin-depolymerizing factor	-	1e-13	At4g25590	ADF7 (actin depolymerizing factor 7)	O.I.	H.G.	S.X.
0.57	75.1	0.96	Zm.3058.1.A1_at	BM338821	glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform	-	6e-36	At3g27300	G6PD5 (glucose-6-phosphate dehydrogenase 5)	O.I.	H.G.	S.X.
0.50	65.7	0.97	Zm.6743.3.S1_at	AY104585.1	hypothetical protein LOC100216801	-	2e-10	At3g02420	unknown protein	O.I.	H.G.	S.X.
0.50	65.7	0.97	Zm.9017.1.A1_at	BM338660	Hypothetical protein LOC100193460	-	2e+0	At1g64290	F-box protein-related	O.I.	H.G.	S.X.
0.44	55.7	0.96	Zm.4613.1.A1_at	CK826972	-	-	5e-1	At1g73770	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	92.1	0.96	Zm.10122.1.S1_at	BM380628	transmembrane emp24 domain-containing protein 10	-	2e-3	At1g57620	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.
0.77	92.1	0.96	Zm.4188.1.A1_at	AW438194	hypothetical protein LOC100277507	-	6e+0	At4g07400	VFB3 (VIER F-BOX PROTEINE 3)	O.I.	H.G.	S.X.
0.67	85.8	0.97	Zm.18462.1.S1_at	CO517427	-	-	1e+0	At4g09550	unknown protein	O.I.	H.G.	S.X.
0.57	75.1	0.96	Zm.875.1.A1_at	AY106374.1	-	-	4e-4	At3g14860	NHL repeat-containing protein	O.I.	H.G.	S.X.
0.55	71.6	0.93	Zm.2704.1.S1_at	AW066934	-	-	2e-44	At3g44850	protein kinase-related	O.I.	H.G.	S.X.
0.50	65.7	0.95	Zm.9575.1.A1_at	BG268282	-	-	9e-1	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.
0.50	65.7	0.96	Zm.3198.1.A1_at	CF243896	-	-	9e-59	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.
0.50	65.7	0.97	Zm.9752.1.A1_at	CF629450	hypothetical protein LOC100279701	-	2e+0	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.
0.44	55.7	0.94	Zm.19199.1.A1_at	AW267377	-	-	4e+0	At5g16030	unknown protein	O.I.	H.G.	S.X.
0.44	55.7	0.95	Zm.5732.1.A1_x_at	AY108368.1	hypothetical protein LOC100272253	-	1e+0	At1g05780	unknown protein	O.I.	H.G.	S.X.
0.44	55.7	0.95	Zm.2900.1.S1_at	CA827078	-	-	3e-1	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	O.I.	H.G.	S.X.
0.44	55.7	0.95	Zm.8183.1.A1_at	BM073193	-	-	1e+0	At4g17980	anac071 (Arabidopsis NAC domain containing protein 71)	O.I.	H.G.	S.X.
0.44	55.7	0.96	Zm.8788.1.A1_at	BE186906	hypothetical protein LOC100276785	-	1e+0	At5g41570	WRKY24	O.I.	H.G.	S.X.
0.43	52.8	0.93	Zm.15282.1.A1_at	BM382478	-	-	7e-2	At2g43610	glycoside hydrolase family 19 protein	O.I.	H.G.	S.X.
0.43	52.8	0.95	Zm.10728.1.A1_at	BQ539251	-	-	4e+0	At2g10557	unknown protein	O.I.	H.G.	S.X.
0.40	48.5	0.92	Zm.5787.2.A1_at	AY107157.1	-	-	4e-1	At5g48790	unknown protein	O.I.	H.G.	S.X.
0.40	48.5	0.96	Zm.1066.1.S1_a_at	AY104986.1	hypothetical protein LOC100274112	-	1e-14	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.
0.40	48.5	0.96	Zm.16588.1.A1_at	CK369886	IDP139 protein	-	1e+0	At1g67980	CCoAMT	O.I.	H.G.	S.X.
0.40	48.5	0.96	Zm.14916.4.S1_a_at	BM078301	hypothetical protein LOC100193596 /// ubiquitin-conjugating enzyme E2-21 kDa 1	-	1e-20	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	O.I.	H.G.	S.X.
0.36	41.3	0.93	ZmAffx.986.1.S1_at	AI834598	-	-	8e-1	At5g10260	AtRABH1e (Arabidopsis Rab GTPase homolog H1e)	O.I.	H.G.	S.X.
0.36	41.3	0.94	Zm.17921.1.A1_at	CO526378	hypothetical protein LOC100273158	-	1e-8	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.
0.36	41.3	0.95	Zm.3477.1.A1_at	AY108530.1	-	-	2e+0	At4g30670	unknown protein	O.I.	H.G.	S.X.
0.36	41.3	0.97	Zm.5904.1.A1_at	AW091094	hypothetical protein LOC100278561	-	2e-5	At2g21600	ATRER1B	O.I.	H.G.	S.X.
0.33	36.0	0.94	Zm.7056.12.A1_a_at	AI746152	60S ribosomal protein L5-1	-	2e-1	At5g39740	60S ribosomal protein L5 (RPL5B)	O.I.	H.G.	S.X.
0.32	33.4	0.96	Zm.4546.1.A1_at	BG266283	-	-	2e-1	At5g57300	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.
0.31	31.6	0.93	Zm.7823.1.S1_at	BM078187	-	-	3e-9	At1g09130	ATP-dependent Clp protease proteolytic subunit, putative	O.I.	H.G.	S.X.
0.31	31.6	0.96	Zm.13884.2.S1_x_at	AF099414.1	R2R3MYB-domain protein /// R2R3MYB-domain protein	-	4e-6	At4g38620	MYB4	O.I.	H.G.	S.X.
0.30	29.8	0.95	Zm.13708.1.A1_at	AY106587.1	-	-	2e-16	At4g13930	SHM4 (serine hydroxymethyltransferase 4)	O.I.	H.G.	S.X.
0.29	28.1	0.95	Zm.13555.1.S1_at	AY108171.1	hypothetical protein LOC100272405	-	3e-3	At4g18300	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.
0.29	28.1	0.95	Zm.2820.1.A1_at	AW091250	hypothetical protein LOC100191490	-	4e-2	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	O.I.	H.G.	S.X.
0.29	28.1	0.96	Zm.13534.1.A1_at	CF625575	nicotinate phosphoribosyltransferase-like protein	-	2e-5	At2g23420	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.
0.27	24.6	0.94	Zm.3890.1.A1_at	BG841064	-	-	2e-28	At2g27210	kelch repeat-containing serine/threonine phosphoesterase family protein	O.I.	H.G.	S.X.
0.27	24.6	0.95	Zm.114.1.A1_at	X89761.1	Hox2b protein	-	6e-1	At3g19510	HAT3.1	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.4302.2.A1_a_at	BM074215	protease inhibitor/seed storage/LTP family protein /// protease inhibitor/seed storage/LTP family protein /// PVR3-like protein	-	3e-1	At1g79180	MYB63 (MYB DOMAIN PROTEIN 63)	O.I.	H.G.	S.X.
0.26	22.7	0.96	Zm.4503.1.A1_a_at	AY108034.1	-	-	6e+0	At5g46840	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.25	21.3	0.94	Zm.813.1.S1_at	AF244683.1	glutathione S-transferase GST 18	-	3e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	O.I.	H.G.	S.X.
0.25	21.3	0.94	Zm.9623.1.A1_at	BM347558	-	-	5e+0	At5g56520	unknown protein	O.I.	H.G.	S.X.
0.25	21.3	0.94	Zm.8944.1.S1_at	CO520184	stem-specific protein TSJT1	-	6e-1	At5g19140	AILP1	O.I.	H.G.	S.X.
0.25	21.3	0.95	Zm.10333.1.A1_at	CF005301	hypothetical protein LOC100279061	-	7e+0	At4g15460	glycine-rich protein	O.I.	H.G.	S.X.
0.25	21.3	0.95	Zm.16367.2.S1_at	CF348974	-	-	9e+0	At4g05494	unknown protein	O.I.	H.G.	S.X.
0.25	21.3	0.95	Zm.1710.1.S1_at	AY106827.1	-	-	2e-9	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	O.I.	H.G.	S.X.
0.25	21.3	0.96	Zm.3892.7.A1_a_at	CA399211	Elongation factor 1 alpha	-	4e-128	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.5 99.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8 99.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6 99.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8 98.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4 98.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2 98.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2 98.2 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0 98.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM320459 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
20.5	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.5542.1.S1_at
Gene name	Hypothetical protein LOC100193112
Homology with Arabidopsis	Similar to At3g15140: exonuclease family protein (HF=7e-4)
Module size	6 genes
NF	0.57
%ile	76.4

Co-expression analysis

Gene ID Zm.5542.1.S1_at Gene name Hypothetical protein LOC100193112 Homology with ArabidopsisSimilar to At3g15140: exonuclease family protein (HF=7e-4) Module size 6 genes NF 0.57 %ile 76.4

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.5542.1.S1_at

Gene name Hypothetical protein LOC100193112
Homology with Arabidopsis Similar to At3g15140: exonuclease family protein (HF=7e-4)

Module size 6 genes

NF 0.57

%ile 76.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera