Co-expression analysis

Gene ID	Zm.5542.1.S1_at
Gene name	Hypothetical protein LOC100193112
Homology with Arabidopsis	Similar to At3g15140: exonuclease family protein (HF=7e-4)
Module size	6 genes
NF	0.57
%ile	76.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.97	Zm.5542.1.S1_at	CO518213	Hypothetical protein LOC100193112	-	7e-4	At3g15140	exonuclease family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.96	Zm.3832.1.S1_at	AY112267.1	actin-depolymerizing factor	-	1e-13	At4g25590	ADF7 (actin depolymerizing factor 7)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.3058.1.A1_at	BM338821	glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform	-	6e-36	At3g27300	G6PD5 (glucose-6-phosphate dehydrogenase 5)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.6743.3.S1_at	AY104585.1	hypothetical protein LOC100216801	-	2e-10	At3g02420	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.9017.1.A1_at	BM338660	Hypothetical protein LOC100193460	-	2e+0	At1g64290	F-box protein-related	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.4613.1.A1_at	CK826972	-	-	5e-1	At1g73770	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.5	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1615863_at, orthologous to the query gene, Zm.5542.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1615863_at	At3g15140	hypothetical protein LOC100241130	-	2e-1	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1606853_at	At3g15140	hypothetical protein LOC100250537	-	9e-23	At3g21110	PUR7 (PURIN 7)	O.I.	H.G.	S.X.	Please select
0.12	12.1	1622666_at	At3g15140	hypothetical protein LOC100248927	-	5e-7	At1g09620	ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.10	10.3	1613245_s_at	At3g15140	similar to 60S ribosomal protein L11 (RPL11B)	-	7e-108	At3g58700	60S ribosomal protein L11 (RPL11B)	O.I.	H.G.	S.X.	Please select
0.10	10.3	1615712_s_at	At3g15140	similar to nascent polypeptide associated complex alpha	-	2e-43	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.08	8.5	1613722_s_at	At3g15140	hypothetical protein LOC100256940	-	4e+0	At5g64620	C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Back to the CoP portal site

Back to the KAGIANA project homepage