CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.5542.1.S1_at

Gene name Hypothetical protein LOC100193112
Homology with Arabidopsis Similar to At3g15140: exonuclease family protein (HF=7e-4)

Module size 6 genes

NF 0.57

%ile 76.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 65.7 0.97 Zm.5542.1.S1_at CO518213 Hypothetical protein LOC100193112 - 7e-4 At3g15140 exonuclease family protein O.I. H.G. S.X.
0.71 88.2 0.96 Zm.3832.1.S1_at AY112267.1 actin-depolymerizing factor - 1e-13 At4g25590 ADF7 (actin depolymerizing factor 7) O.I. H.G. S.X.
0.57 75.1 0.96 Zm.3058.1.A1_at BM338821 glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform - 6e-36 At3g27300 G6PD5 (glucose-6-phosphate dehydrogenase 5) O.I. H.G. S.X.
0.50 65.7 0.97 Zm.6743.3.S1_at AY104585.1 hypothetical protein LOC100216801 - 2e-10 At3g02420 unknown protein O.I. H.G. S.X.
0.50 65.7 0.97 Zm.9017.1.A1_at BM338660 Hypothetical protein LOC100193460 - 2e+0 At1g64290 F-box protein-related O.I. H.G. S.X.
0.44 55.7 0.96 Zm.4613.1.A1_at CK826972 - - 5e-1 At1g73770 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.5 99.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8 99.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6 99.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8 98.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4 98.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2 98.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2 98.2 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0 98.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM320459 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g15140, orthologous to the query gene, Zm.5542.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At3g15140 820745 exonuclease family protein F:exonuclease activity;P:unknown;C:intracellular, chloroplast;MOPBF O.I. H.G. S.X.
0.33 38.1 At5g15010 831353 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFBA O.I. H.G. S.X.
0.22 17.5 At3g05130 819675 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. H.G. S.X.
0.18 11.4 At1g06270 837138 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. H.G. S.X.
0.17 10.2 At3g49890 824151 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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