Co-expression analysis

Gene ID	Zm.5535.1.S1_at
Gene name	Protein kinase-like
Homology with Arabidopsis	Similar to At3g62220: serine/threonine protein kinase, putative (HF=1e-52)
Module size	9 genes
NF	0.41
%ile	47.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.0	0.99	Zm.5535.1.S1_at	AY108314.1	Protein kinase-like	-	1e-52	At3g62220	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	Zm.18974.1.A1_at	BQ539399	hypothetical protein LOC100272472	-	3e-1	At1g17147	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.99	Zm.14759.1.S1_at	CB280800	hypothetical protein LOC100191677	-	4e-2	At5g46640	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.10507.1.S1_at	CA827194	-	-	9e-6	At5g53905	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	1.00	Zm.7054.1.S1_at	BM331766	actin-depolymerizing factor 6	-	6e-4	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.99	Zm.13403.1.S1_x_at	AF457949.1	-	-	2e-2	At1g67640	lysine and histidine specific transporter, putative	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.99	Zm.13551.1.A1_at	AY108205.1	-	-	2e+0	At2g33870	ArRABA1h (Arabidopsis Rab GTPase homolog A1h)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.99	Zm.12300.1.A1_at	CF626520	ruBisCO large subunit-binding protein subunit alpha	-	1e-37	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	O.I.	H.G.	S.X.	Please select
0.22	16.9	1.00	Zm.12184.1.A1_at	BM380021	-	-	6e-10	At4g11960	PGRL1B (PGR5-Like B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.4	98.1	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
8.0	98.0	GSM290556	CCR mutant M2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
6.2	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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