Co-expression analysis

Gene ID Zm.5474.1.S1_at
Gene name hypothetical protein LOC100194401
Homology with ArabidopsisSimilar to At4g11450: unknown protein (HF=2e-3)
Module size 7 genes
NF 0.58
%ile 77.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.97Zm.5474.1.S1_atCO531804hypothetical protein LOC100194401-2e-3At4g11450unknown proteinO.I.H.G.S.X.
0.8395.60.98Zm.13114.1.A1_atCA404567chloroplast outer envelope protein 86-4e-3At5g57720transcriptional factor B3 family proteinO.I.H.G.S.X.
0.8094.00.98Zm.7407.1.A1_x_atBM074289--3e-7At4g37760SQE3 (squalene epoxidase 3)O.I.H.G.S.X.
0.5775.10.98Zm.4380.1.A1_atAY105814.1Hypothetical protein LOC100193145-5e-10At2g29200APUM1 (Arabidopsis Pumilio 1)O.I.H.G.S.X.
0.5571.60.98Zm.1119.1.A1_atBE510368--1e-2At1g78922unknown proteinO.I.H.G.S.X.
0.5369.10.98Zm.1996.1.S1_atCK347826hypothetical protein LOC100276029-6e-4At1g47420-O.I.H.G.S.X.
0.3641.30.97Zm.14057.2.S1_x_atAF457961.1--8e-20At4g22910FZR2 (FIZZY-RELATED 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.598.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.291.3GSM206303Upper pulvinus 30 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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