Co-expression analysis

Gene ID	Zm.5425.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g08010: zinc finger (GATA type) family protein (HF=1e+0)
Module size	11 genes
NF	0.36
%ile	38.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.99	Zm.5425.1.S1_a_at	AY105598.1	-	-	1e+0	At1g08010	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.99	Zm.2234.1.S1_a_at	CO526542	hypothetical protein LOC100276749 /// hypothetical protein LOC100276758	-	2e+1	At5g53486	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.99	Zm.4239.1.A1_at	BM080569	hypothetical protein LOC100193561	-	2e+0	At5g04820	OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.99	Zm.10063.1.A1_at	BM378869	homeobox protein HD1	-	1e-12	At4g32040	KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.4308.1.A1_at	AY112093.1	-	-	1e-1	At1g08390	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.17842.1.S1_at	CK787020	calcium-dependent protein kinase, isoform AK1	-	3e-11	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.99	Zm.889.1.A1_s_at	M55021.1	-	-	2e-12	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	Zm.9409.1.A1_at	AY108164.1	-	-	3e-1	At1g79850	RPS17 (RIBOSOMAL PROTEIN S17)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.99	Zm.12157.1.S1_a_at	CF041742	PIF-like orf1	-	6e-1	At5g20180	ribosomal protein L36 family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.99	Zm.16578.1.A1_a_at	CK369163	-	-	3e-1	At5g37820	NIP4	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.99	Zm.13635.1.A1_at	AY107316.1	growth regulator like protein	-	4e+0	At3g52070	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.7	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.3	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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