Co-expression analysis

Gene ID	Zm.5358.1.A1_at
Gene name	ras-related protein Rab11D
Homology with Arabidopsis	Similar to At2g01250: 60S ribosomal protein L7 (RPL7B) (HF=9e-1)
Module size	14 genes
NF	0.43
%ile	50.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	97.0	0.96	Zm.5358.1.A1_at	CF003205	ras-related protein Rab11D	-	9e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.97	Zm.16305.1.A1_at	CA398833	-	-	9e-15	At3g15640	cytochrome c oxidase family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.6475.3.S1_at	AI737301	PHD finger protein	-	3e-18	At2g02470	AL6 (ALFIN-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.3646.1.A1_at	CA400978	hypothetical protein LOC100272696	-	2e-7	At4g26780	AR192	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	Zm.5364.1.S1_at	CF273142	-	-	9e-5	At3g09880	ATB' BETA	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.16854.1.S1_at	CF674957	hypothetical protein LOC100273231	-	1e-1	At3g18220	phosphatidic acid phosphatase family protein / PAP2 family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.2529.1.A1_s_at	BQ539485	-	-	1e+0	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.253.1.A1_at	CF020390	hypothetical protein LOC100279053	-	5e+0	At5g29807	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.2530.1.A1_at	CF637153	-	-	7e-5	At1g58350	ZW18	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.11077.1.A1_at	BM336854	-	-	2e+1	At4g03205	coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.4048.1.S1_at	AW091504	ras-related protein ARA-4	-	5e-35	At2g43130	ARA4	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.16976.1.S1_at	CA404460	-	-	2e-10	At1g68410	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.5953.1.A1_at	BM334343	hypothetical protein LOC100280427	-	2e+0	At5g65130	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.4271.2.A1_at	AY103821.1	Isoflavone reductase-like1	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.6	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM253252	ZM_24h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.7	95.4	GSM253244	ZM_12h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.5	95.1	GSM253247	ZM_12h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.4	94.9	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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