Co-expression analysis

Gene ID Zm.534.1.A1_at
Gene name protein kinase AKINbetagamma-2
Homology with ArabidopsisSimilar to At1g09020: SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) (HF=3e-10)
Module size 7 genes
NF 0.52
%ile 67.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4455.70.96Zm.534.1.A1_atAF276086.1protein kinase AKINbetagamma-2-3e-10At1g09020SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)O.I.H.G.S.X.
0.6077.80.96Zm.5020.1.S1_atAI600437hypothetical protein LOC100216870-1e-5At4g29080PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)O.I.H.G.S.X.
0.6077.80.97Zm.2371.1.S1_atBM073100--6e-1At4g08190Ras-related GTP-binding protein, putativeO.I.H.G.S.X.
0.5571.60.97Zm.477.1.A2_a_atAY109348.1brittle stalk-2-like protein 3-1e-15At5g60920COB (COBRA)O.I.H.G.S.X.
0.5065.70.97Zm.237.1.S1_atAJ011616.1SBP-domain protein3-2e-8At1g02065SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)O.I.H.G.S.X.
0.4352.80.96Zm.5086.2.S1_atCK368957hypothetical protein LOC100277068-2e+0At3g13686unknown proteinO.I.H.G.S.X.
0.3538.90.96Zm.16419.1.S1_atCF273296hypothetical protein LOC100276284-2e+1At5g08190NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.998.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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