Co-expression analysis

Gene ID	Zm.5330.1.A1_at
Gene name	1,4-dihydroxy-2-naphthoate octaprenyltransferase
Homology with Arabidopsis	Similar to At1g60600: ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4) (HF=5e-5)
Module size	6 genes
NF	0.07
%ile	3.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.99	Zm.5330.1.A1_at	BG842362	1,4-dihydroxy-2-naphthoate octaprenyltransferase	-	5e-5	At1g60600	ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	ZmAffx.1138.1.A1_at	AW331524	-	-	2e-3	At3g22968	CPuORF59 (Conserved peptide upstream open reading frame 59)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.99	ZmAffx.1114.1.S1_at	AW231622	-	-	8e-1	At3g54340	AP3 (APETALA 3)	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.99	Zm.4935.1.A1_at	AI586495	-	-	3e-1	At5g49230	HRB1 (HYPERSENSITIVE TO RED AND BLUE)	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.99	Zm.16074.1.A1_at	CO527117	-	-	2e+1	At5g02240	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.99	Zm.17637.1.S1_at	CK368490	-	-	5e+0	At2g22450	riboflavin biosynthesis protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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