Co-expression analysis

Gene ID Zm.5319.1.S1_a_at
Gene name lipoxygenase
Homology with ArabidopsisSimilar to At3g22400: LOX5 (HF=4e-7)
Module size 6 genes
NF 0.24
%ile 19.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5571.60.97Zm.5319.1.S1_a_atAY103567.1lipoxygenase-4e-7At3g22400LOX5O.I.H.G.S.X.
0.3336.00.98Zm.8376.1.S1_atBM073880hypothetical protein LOC100280303-4e-1At3g4459060S acidic ribosomal protein P2 (RPP2D)O.I.H.G.S.X.
0.3233.40.97Zm.8945.1.S1_atAY103889.1--2e-85At5g18580FASS (FASS 1)O.I.H.G.S.X.
0.2622.70.97Zm.5065.1.S1_x_atBM318796Diacylglycerol kinase 1-9e+0At2g39630glycosyl transferase family 2 proteinO.I.H.G.S.X.
0.2216.90.97Zm.16305.1.A1_atCA398833--9e-15At3g15640cytochrome c oxidase family proteinO.I.H.G.S.X.
0.115.30.97Zm.5237.1.A1_atAY107290.1hypothetical protein LOC100273890-2e-19At1g47260GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4455.70.95Zm.2547.1.A1_atBG840981EREBP-4 like protein-5e-11At4g17486unknown proteinO.I.H.G.S.X.
0.3641.30.98Zm.18047.1.S1_atCF623859hypothetical protein LOC100275732-2e+0At5g42250alcohol dehydrogenase, putativeO.I.H.G.S.X.
0.3336.00.95Zm.3088.1.S1_atAW155774serine carboxypeptidase 1-4e+0At5g52750heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.3131.60.98Zm.6569.9.A1_atAW09144740S ribosomal protein S15-6e-37At5g0951040S ribosomal protein S15 (RPS15D)O.I.H.G.S.X.
0.3029.80.97Zm.18243.1.A1_atCN845008--3e-4At1g23170unknown proteinO.I.H.G.S.X.
0.3029.80.93Zm.14308.1.A1_atAI979735adenine phosphoribosyltransferase 1-7e-13At1g27450APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)O.I.H.G.S.X.
0.2928.10.93Zm.12634.5.S1_atBQ539541--3e-14At1g0448060S ribosomal protein L23 (RPL23A)O.I.H.G.S.X.
0.2928.10.97Zm.3954.1.A1_atCF627734shikimate kinase-7e-4At2g21940shikimate kinase, putativeO.I.H.G.S.X.
0.2521.30.97Zm.3646.1.A1_atCA400978hypothetical protein LOC100272696-2e-7At4g26780AR192O.I.H.G.S.X.
0.2419.80.96Zm.5358.1.A1_atCF003205ras-related protein Rab11D-9e-1At2g0125060S ribosomal protein L7 (RPL7B)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.298.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320461protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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