Co-expression analysis

Gene ID	Zm.5300.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g01020: protein kinase family protein (HF=5e-9)
Module size	9 genes
NF	0.33
%ile	33.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	96.8	0.98	Zm.5300.1.A1_at	AI734564	-	-	5e-9	At5g01020	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.7138.3.S1_x_at	CK370845	cytidine deaminase-like	-	1e-23	At5g28050	cytidine/deoxycytidylate deaminase family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.2141.1.A1_at	BM347927	-	-	2e-7	At1g73980	phosphoribulokinase/uridine kinase family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.7034.2.S1_at	AI770602	-	-	1e+0	At4g18080	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.99	Zm.14703.2.A1_a_at	CF634914	hypothetical protein LOC100194060	-	3e-7	At5g66650	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.99	Zm.7176.1.A1_at	CF629363	-	-	5e+0	At5g05210	nucleolar matrix protein-related	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.99	Zm.7034.2.A1_a_at	AI770602	hypothetical protein LOC100279884	-	1e+0	At4g18080	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.99	Zm.2200.1.A1_at	BG841101	-	-	6e+0	At4g35785	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.99	Zm.5213.1.A1_at	CF035372	protein binding protein	-	2e-4	At5g08139	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.0	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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